| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,483,753 | T→C | T231T (ACT→ACC) | hrpA → | ATP‑dependent RNA helicase HrpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,483,753 | 0 | T | C | 100.0% | 66.7 / NA | 20 | T231T (ACT→ACC) | hrpA | ATP‑dependent RNA helicase HrpA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/10); total (10/10) | |||||||||||
TATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGA > NC_000913/1483675‑1483830 | tatCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCAt < 2:252463/81‑1 (MQ=255) atCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATc > 2:252487/1‑81 (MQ=255) cGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGa > 1:252488/1‑81 (MQ=255) gCTAGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACg > 2:252494/1‑81 (MQ=255) cTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACg < 1:252464/80‑1 (MQ=255) tttGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTcgcg < 2:252465/81‑1 (MQ=255) gAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGcc < 2:252466/80‑1 (MQ=255) gctgcCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTtaataa > 1:252499/1‑81 (MQ=255) cggcgTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCg < 1:252467/81‑1 (MQ=255) ggcgTCCTGACCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGa > 1:252490/1‑81 (MQ=255) aCCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAg > 2:252491/1‑81 (MQ=255) aCCTAAAAATCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAg < 1:252468/81‑1 (MQ=255) aaaaaTCATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGtctc > 1:252496/1‑81 (MQ=255) cATTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCg > 1:252503/1‑81 (MQ=255) aTTATCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCg < 2:252469/80‑1 (MQ=255) aTCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGAcc > 1:252506/1‑81 (MQ=255) tCACTTCCGCGACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGAcc < 2:252470/80‑1 (MQ=255) gcgACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTg < 2:252471/81‑1 (MQ=255) gcgACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTg > 2:252495/1‑81 (MQ=255) gACCATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGa < 2:252472/81‑1 (MQ=255) | TATCGATTTTTTGCTCGGCTATTTGAAAGAGTTGCTGCCGCGGCGTCCTGACCTAAAAATCATTATCACTTCCGCGACTATCGACCCGGAACGCTTTTCGCGCCACTTTAATAATGCGCCGATTATTGAAGTCTCCGGTCGGACCTATCCGGTGGA > NC_000913/1483675‑1483830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |