Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,706,464	A→T	K39N (AAA→AAT)	rsxB →	SoxR [2Fe‑2S] reducing system protein RsxB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,706,464	0	A	T	100.0%	78.8 / NA	23	K39N (AAA→AAT)	rsxB	SoxR [2Fe‑2S] reducing system protein RsxB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (11/12);  total (11/12)

GGCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAAAATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGCCATCA  >  NC_000913/1706390‑1706540                                                                           |                                                                             ggCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGAc                                                                        <  1:278044/81‑1 (MQ=255)        cGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCt                                                                 <  2:278045/81‑1 (MQ=255)                gcaaTTCAGGGTTATACCTCCCGCCGTTTTGCGGAGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCag                                                         <  2:278048/78‑1 (MQ=255)                  cATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCagag                                                       <  1:278046/81‑1 (MQ=255)                   aTTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGc                                                      <  2:278047/81‑1 (MQ=255)                            tATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGt                                             >  2:278080/1‑81 (MQ=255)                                 cTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTg                                        <  2:278049/81‑1 (MQ=255)                                   cccGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCg                                      >  1:278071/1‑81 (MQ=255)                                    ccgccgTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGc                                       <  1:278050/79‑1 (MQ=255)                                      gccgTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGt                                    >  2:278082/1‑80 (MQ=255)                                          ttttGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATcc                               <  2:278051/81‑1 (MQ=255)                                          ttttGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATcc                               >  2:278083/1‑81 (MQ=255)                                            ttGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCg                             >  2:278076/1‑81 (MQ=255)                                               cGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCCTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGc                           <  2:278052/80‑1 (MQ=255)                                                 gTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGt                        >  2:278075/1‑81 (MQ=255)                                                  tGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTc                       <  1:278053/81‑1 (MQ=255)                                                     aaGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCTCGGCTGTCGcc                    <  2:278054/81‑1 (MQ=255)                                                          gATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTAc               >  1:278078/1‑81 (MQ=255)                                                           aTCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTAcg              >  2:278077/1‑81 (MQ=255)                                                             ccGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTAcgcg            >  2:278079/1‑81 (MQ=255)                                                                  cGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGc       >  1:278092/1‑81 (MQ=255)                                                                       agaATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGCCAt    >  2:278089/1‑79 (MQ=255)                                                                       agaATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGCCATCa  <  1:278055/81‑1 (MQ=255)                                                                           |                                                                             GGCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAAAATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGCCATCA  >  NC_000913/1706390‑1706540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑