| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,719,889 | T→C | V5A (GTA→GCA) | slyB → | outer membrane lipoprotein SlyB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,719,889 | 0 | T | C | 100.0% | 44.0 / NA | 14 | V5A (GTA→GCA) | slyB | outer membrane lipoprotein SlyB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/7); total (7/7) | |||||||||||
CTTTGACCATGAGGGATGCTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGTATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTT > NC_000913/1719821‑1719959 | cTTTGACCATGAGGGATGCTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGttt < 1:279739/80‑1 (MQ=255) gggATGCTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGgtct < 2:279740/81‑1 (MQ=255) aTGCTTGCGTGGCGTTGCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGgtctgtc < 2:279741/81‑1 (MQ=255) cTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTctct < 1:279742/81‑1 (MQ=255) gCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGt > 2:279753/1‑81 (MQ=255) cGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGt < 2:279743/80‑1 (MQ=255) gTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTtgt > 1:279758/1‑81 (MQ=255) aTGGTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTtaa > 1:279757/1‑81 (MQ=255) ggTGAACAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTtaat > 2:279755/1‑80 (MQ=255) aaCAGGAGATTTTTCCATGATTATACGCGCATCGGTTGTTTCACCGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGa > 2:279756/1‑81 (MQ=255) aaCAGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGa < 2:279744/81‑1 (MQ=255) aGGAGATTTTTCAATGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGacac > 1:279745/1‑81 (MQ=255) tGATTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATg > 2:279761/1‑81 (MQ=255) aTTAAACGCGCATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGtt < 2:279746/81‑1 (MQ=255) | CTTTGACCATGAGGGATGCTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAATGATTAAACGCGTATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGATGTT > NC_000913/1719821‑1719959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |