| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,774,321 | T→C | V178A (GTC→GCC) | ydiB → | shikimate dehydrogenase/quinate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,774,321 | 0 | T | C | 100.0% | 45.3 / NA | 14 | V178A (GTC→GCC) | ydiB | shikimate dehydrogenase/quinate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (6/8); total (6/8) | |||||||||||
CTCTTTAACCGTCGGGATGAGTTCTTCGATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGTCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGACATTTTAACCAATGG > NC_000913/1774245‑1774396 | ctctTTAACCGTCGGGATGAGTTCTTCGATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTgccgt > 2:286532/1‑80 (MQ=255) ctTTAACCGTCGGGATGAGTTCTTCGATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGCCGTCAc > 2:286526/1‑81 (MQ=255) gTCGGGATGAGTTCTTCGATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCAcc > 1:286527/1‑80 (MQ=255) gggATGAGTTCTTCGATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGAt < 1:286505/80‑1 (MQ=255) gATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCa < 1:286506/80‑1 (MQ=255) gCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCttt > 1:286528/1‑81 (MQ=255) gCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGaa < 2:286507/81‑1 (MQ=255) gcgcAGCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCt < 2:286508/80‑1 (MQ=255) gCGGGTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTc < 1:286509/81‑1 (MQ=255) ggTTAATGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTccgc > 2:286529/1‑81 (MQ=255) aaTGAAAACACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGa < 2:286510/80‑1 (MQ=255) aaaaCACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGACAttt < 2:286511/81‑1 (MQ=255) aaaaCACCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGACAttt < 2:286512/81‑1 (MQ=255) acCGATTGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGACATTTTAAc > 1:286530/1‑80 (MQ=255) ttGTGCCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGACATTTTAACCAATgg > 2:286531/1‑81 (MQ=255) | CTCTTTAACCGTCGGGATGAGTTCTTCGATAAAGCCCTCGCCTTCGCGCAGCGGGTTAATGAAAACACCGATTGTGTCGTCACGGTCACCGATCTCGCCGATCAGCAAGCCTTTGCTGAAGCCCTGGCTTCCGCCGACATTTTAACCAATGG > NC_000913/1774245‑1774396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |