| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,775,523 | G→A | intergenic (+79/‑64) | aroD → / → ydiF | 3‑dehydroquinate dehydratase/putative acetate‑CoA transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,775,523 | 0 | G | A | 100.0% | 60.9 / NA | 18 | intergenic (+79/‑64) | aroD/ydiF | 3‑dehydroquinate dehydratase/putative acetate‑CoA transferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/6); total (12/6) | |||||||||||
AATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGT > NC_000913/1775447‑1775597 | aataatATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGtc < 2:286632/81‑1 (MQ=255) ataataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGtct < 2:286633/81‑1 (MQ=255) aataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGTctct > 2:286650/1‑81 (MQ=255) tttCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTgc > 2:286642/1‑81 (MQ=255) ggcggGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCt > 2:286646/1‑80 (MQ=255) cacCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCa > 1:286647/1‑81 (MQ=255) cccTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCAtt < 2:286634/81‑1 (MQ=255) gAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAggg > 2:286648/1‑80 (MQ=255) aaaaTATATTCAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATca > 2:286651/1‑80 (MQ=255) tatatTCAATCGTATTTAATAAAAATATTTCGTAATTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCt > 2:286649/1‑81 (MQ=255) cAATCGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATc < 2:286635/80‑1 (MQ=255) cGTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGaa > 2:286652/1‑81 (MQ=255) gTATTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAt > 2:286656/1‑81 (MQ=255) aTTTAATAAAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt > 2:286644/1‑80 (MQ=255) taataaAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAAc < 1:286636/80‑1 (MQ=255) taaAAATATTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAAt > 1:286653/1‑80 (MQ=255) tatTTCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCt < 1:286637/81‑1 (MQ=255) ttCGTAAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGt > 2:286654/1‑80 (MQ=255) | AATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGT > NC_000913/1775447‑1775597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |