| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,023,827 | T→C | intergenic (+149/‑141) | fliR → / → rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,023,827 | 0 | T | C | 100.0% | 66.6 / NA | 20 | intergenic (+149/‑141) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/8); total (12/8) | |||||||||||
CTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCG > NC_000913/2023752‑2023904 | cTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACtata < 2:320098/80‑1 (MQ=255) cggaaTATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACt > 2:320116/4‑81 (MQ=255) aaaTATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACttt < 1:320099/81‑1 (MQ=255) tttGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACgg < 1:320100/80‑1 (MQ=255) gTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGa > 2:320120/1‑79 (MQ=255) gTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGAt < 1:320101/80‑1 (MQ=255) tAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGt > 2:320121/1‑79 (MQ=255) aaGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAg > 1:320119/1‑81 (MQ=255) atatCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaa > 1:320117/1‑80 (MQ=255) atatCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaa > 1:320122/1‑80 (MQ=255) tCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATc < 1:320102/81‑1 (MQ=255) gCAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgc > 2:320129/1‑81 (MQ=255) cAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgcg < 2:320103/81‑1 (MQ=255) cAACATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgc > 2:320126/1‑80 (MQ=255) aaCATTTACTTTACTTTAAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATcgc > 1:320127/1‑79 (MQ=255) actttaAGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCAt > 2:320128/1‑80 (MQ=255) aaGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGt > 2:320125/1‑80 (MQ=255) aGACAATTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTg < 1:320104/80‑1 (MQ=255) aTTCCAGGCAAACTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCAt < 2:320105/81‑1 (MQ=255) aaaCTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCg > 1:320131/1‑81 (MQ=255) | CTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCG > NC_000913/2023752‑2023904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |