| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,483,224 | A→G | L39S (TTA→TCA) | emrK ← | tripartite efflux pump membrane fusion protein EmrK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,483,224 | 0 | A | G | 100.0% | 62.9 / NA | 19 | L39S (TTA→TCA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (6/13); total (6/13) | |||||||||||
TACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTT > NC_000913/2483150‑2483297 | tACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCa > 1:392907/1‑81 (MQ=255) ccTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCAt < 2:392887/80‑1 (MQ=255) cAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAataggca < 2:392888/80‑1 (MQ=255) aaaTTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAataggcatagg > 2:392909/1‑81 (MQ=255) gCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAAc > 1:392913/1‑81 (MQ=255) cATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGaaa < 1:392889/78‑1 (MQ=255) ccccGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCaa > 1:392914/1‑80 (MQ=255) ccGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCaataa < 2:392890/81‑1 (MQ=255) gTGACATAGGCGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCaataaat < 2:392891/81‑1 (MQ=255) cGTCATCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCg < 2:392892/81‑1 (MQ=255) aTCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCaa < 1:392893/81‑1 (MQ=255) tCTGTACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCaa > 1:392915/1‑80 (MQ=255) tACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAAt < 1:392895/77‑1 (MQ=255) tACTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATaa < 1:392894/79‑1 (MQ=255) cTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGaa < 1:392897/81‑1 (MQ=255) cTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGa > 1:392916/1‑80 (MQ=255) cTAATCATGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGa < 2:392896/80‑1 (MQ=255) aTGTCTTCTGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTAt < 1:392898/81‑1 (MQ=255) tcttctGATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTAttt < 2:392899/80‑1 (MQ=255) | TACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTT > NC_000913/2483150‑2483297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |