| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,626,871 | A→G | C690R (TGC→CGC) | pdeF ← | cyclic di‑GMP phosphodiesterase PdeF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,626,871 | 0 | A | G | 100.0% | 66.9 / NA | 20 | C690R (TGC→CGC) | pdeF | cyclic di‑GMP phosphodiesterase PdeF |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/9); total (11/9) | |||||||||||
AGAGCACCGCCTCGCGGATCTCTTCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCAAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTCAATTTTAAGCAG > NC_000913/2626793‑2626946 | agagCACCGCCTCGCGGATCTCTTCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCgaa < 2:418841/81‑1 (MQ=255) gCACCGCCTCGCGGATCTCTTCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCg < 2:418842/81‑1 (MQ=255) gcgGATCTCTTCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTAt > 2:418872/1‑81 (MQ=255) ctctTCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGAt > 1:418873/1‑80 (MQ=255) ttCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATa < 2:418843/78‑1 (MQ=255) gTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATc > 1:418868/1‑78 (MQ=255) ttttCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGa < 2:418844/81‑1 (MQ=255) ttttCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGa > 1:418869/1‑81 (MQ=255) aaCGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTAtt > 2:418875/1‑81 (MQ=255) gTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGa > 1:418874/1‑81 (MQ=255) aCTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGaca > 2:418882/1‑81 (MQ=255) ctGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACaa > 2:418877/1‑81 (MQ=255) ccACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAatat > 1:418876/1‑81 (MQ=255) cTACCAGCATTTTCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGc < 1:418845/81‑1 (MQ=255) ttttCTTCATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAAc < 1:418846/81‑1 (MQ=255) tcttcATTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTg < 1:418847/80‑1 (MQ=255) aTTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTc > 1:418870/1‑80 (MQ=255) aTTCGCGCCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTCa < 1:418848/81‑1 (MQ=255) gcCAGGTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTCAAtttt > 1:418871/1‑80 (MQ=255) gTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTCAATTTTAAGCAg < 1:418850/81‑1 (MQ=255) gTGGCGAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTCAATTTTAAGCAg < 1:418849/81‑1 (MQ=255) | AGAGCACCGCCTCGCGGATCTCTTCGTTTTCAACGTACTCTGCCACTACCAGCATTTTCTTCATTCGCGCCAGGTGGCAAATCGATGCCACTATCTGATAATCCAGACTATTTGACACAATATTGCGGATAAAACTGCCGTCAATTTTAAGCAG > NC_000913/2626793‑2626946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |