| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,787,520 | C→T | pseudogene (1124/2253 nt) | ygaQ → | putative uncharacterized protein YgaQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,787,520 | 0 | C | T | 100.0% | 76.8 / NA | 22 | pseudogene (1124/2253 nt) | ygaQ | putative uncharacterized protein YgaQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/9); total (13/9) | |||||||||||
GTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCGTT > NC_000913/2787444‑2787597 | gTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTaaaa < 1:448880/81‑1 (MQ=255) gATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACtt > 2:448906/1‑81 (MQ=255) gATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACtt > 1:448905/1‑81 (MQ=255) aTTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACtt < 1:448881/80‑1 (MQ=255) ttCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTc > 2:448908/1‑80 (MQ=255) ttCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTc > 1:448896/1‑80 (MQ=255) ttCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCg < 1:448882/81‑1 (MQ=255) cattcattAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGaa < 1:448883/80‑1 (MQ=255) attAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAg > 1:448920/1‑80 (MQ=255) aaGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAg < 1:448884/81‑1 (MQ=255) ccAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATaa > 2:448922/1‑80 (MQ=255) aaaTCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGaa > 2:448917/1‑80 (MQ=255) aaTCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGaaaa > 1:448914/1‑81 (MQ=255) agaagaTATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGc < 1:448885/81‑1 (MQ=255) gaagaTATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCa > 2:448921/1‑81 (MQ=255) ataCATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaa > 2:448904/1‑79 (MQ=255) cATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaaga > 1:448909/1‑80 (MQ=255) ctcACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaagaaaag > 1:448911/1‑81 (MQ=255) ctcACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaagaaaag > 2:448916/1‑81 (MQ=255) aCTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaagaaaag < 1:448887/78‑1 (MQ=255) aCTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaagaaaag < 1:448886/78‑1 (MQ=255) cTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCGtt < 1:448888/81‑1 (MQ=255) | GTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCGTT > NC_000913/2787444‑2787597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |