Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,317,713	C→T	E98E (GAG→GAA)	rimP ←	ribosome maturation factor RimP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,317,713	0	C	T	100.0%	119.4 / NA	33	E98E (GAG→GAA)	rimP	ribosome maturation factor RimP
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (19/14);  total (19/14)

GTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACCTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTCCAG  >  NC_000913/3317644‑3317787                                                                      |                                                                           gTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGa                                                                  >  2:560781/1‑80 (MQ=255) gTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGa                                                                  >  1:560774/1‑80 (MQ=255) gTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGa                                                                  >  1:560772/1‑80 (MQ=255)  tCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACa                                                                <  1:560735/81‑1 (MQ=255)   cTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACa                                                                >  2:560760/1‑80 (MQ=255)      ccGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACaa                                                               <  2:560735/78‑1 (MQ=255)       cGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACg                                                           >  1:560780/1‑81 (MQ=255)       cGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACg                                                           >  1:560779/1‑81 (MQ=255)        gCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACgg                                                          <  1:560737/81‑1 (MQ=255)              aTAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTa                                                     <  2:560737/80‑1 (MQ=255)              aTAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAg                                                    >  1:560783/1‑81 (MQ=255)                 aCGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAgtgt                                                 <  1:560739/81‑1 (MQ=255)                 aCGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAgtg                                                  <  2:560739/80‑1 (MQ=255)                   gCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTc                                               <  1:560741/81‑1 (MQ=255)                         ccATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCg                                          <  2:560742/80‑1 (MQ=255)                         acATTTACGACGGTTTTGTACCGCCATACGGAGAAACAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGcc                                           <  1:560742/78‑1 (MQ=255)                               acgacgGTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAg                                   >  2:560791/1‑81 (MQ=255)                                    ggTTTTGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGc                              <  1:560744/81‑1 (MQ=255)                                        ttGTACCGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATc                          >  1:560781/1‑81 (MQ=255)                                             ccGCCATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGAc                     <  1:560745/81‑1 (MQ=255)                                                ccATACGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCg                  >  1:560784/1‑81 (MQ=255)                                                    aCGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGt                >  2:560785/1‑79 (MQ=255)                                                    aCGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGt                >  1:560790/1‑79 (MQ=255)                                                     cGGAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTgag             >  1:560789/1‑81 (MQ=255)                                                      ggAGAACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTgag             >  2:560797/1‑80 (MQ=255)                                                       gagaACCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTgag             >  1:560746/1‑79 (MQ=255)                                                          aaCCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGAc        <  1:560747/81‑1 (MQ=255)                                                          aaCCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGAc        <  1:560748/81‑1 (MQ=255)                                                           aCCAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACt       >  1:560808/1‑81 (MQ=255)                                                            ccAGAGTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACtt      >  2:560790/1‑81 (MQ=255)                                                               gagTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTc     >  2:560795/1‑79 (MQ=255)                                                               gagTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTc     >  2:560796/1‑79 (MQ=255)                                                                agTCACTTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTCCAg  <  1:560749/81‑1 (MQ=255)                                                                      |                                                                           GTCTACCGCTTTGATAACGCCCTGCCATTTACGACGGTTTTGTACCGCCATACGGAGAACCAGAGTCACCTCTTCTCCGACAAAACGGGCGTAGTGTTCAGCCGTGAACAGTGGGCGATCGAGACCCGGTGAGGAGACTTCCAG  >  NC_000913/3317644‑3317787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑