| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,360,842 | T→C | intergenic (+226/‑334) | gltD → / → gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,360,842 | 0 | T | C | 100.0% | 56.6 / NA | 17 | intergenic (+226/‑334) | gltD/gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (5/12); total (5/12) | |||||||||||
ATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACC > NC_000913/3360767‑3360918 | atgaGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGc < 1:571125/81‑1 (MQ=255) gTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGc < 2:571125/81‑1 (MQ=255) tGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCt < 1:571127/81‑1 (MQ=255) aGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTAtt < 2:571127/81‑1 (MQ=255) aTTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGt < 2:571128/80‑1 (MQ=255) cGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGtctc > 1:571144/1‑80 (MQ=255) cGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGtctc < 2:571129/80‑1 (MQ=255) gTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGa > 1:571151/1‑81 (MQ=255) aaTTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATAtt < 2:571130/80‑1 (MQ=255) cTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAatat < 2:571131/80‑1 (MQ=255) cacCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAatat > 2:571151/1‑81 (MQ=255) acCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAatat > 2:571144/1‑80 (MQ=255) acCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATg < 1:571133/81‑1 (MQ=255) ccTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGa < 1:571134/81‑1 (MQ=255) ctGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAata > 1:571156/1‑81 (MQ=255) aCAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAata < 2:571134/78‑1 (MQ=255) ccGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAAcc < 1:571136/81‑1 (MQ=255) | ATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACC > NC_000913/3360767‑3360918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |