| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,362,820 | C→T | T5M (ACG→ATG) | yhcD → | putative fimbrial usher protein YhcD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,362,820 | 0 | C | T | 100.0% | 56.6 / NA | 17 | T5M (ACG→ATG) | yhcD | putative fimbrial usher protein YhcD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/12); total (5/12) | |||||||||||
GTTATCGCGGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAACGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGCCGCTGTTGATT > NC_000913/3362749‑3362897 | gTTATCGCGGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGc < 1:571412/81‑1 (MQ=255)gTTATCGCGGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGc < 2:571412/81‑1 (MQ=255) aTCGCGGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCt < 2:571413/80‑1 (MQ=255) tCGCGGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCTac < 2:571414/81‑1 (MQ=255) cgcgGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCTaca > 2:571435/1‑81 (MQ=255) tatGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTg > 2:571443/1‑81 (MQ=255) tacgTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTg < 1:571416/78‑1 (MQ=255) aCTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAAt > 2:571453/1‑81 (MQ=255) aCTTTGCCTGGAGCGACAAGGATGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAAt < 1:571417/81‑1 (MQ=255) gAGCGACAAGGATGTTAAAAAAAATGTTACTAGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGta < 2:571417/81‑1 (MQ=255) gACAAGGATGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATaga < 2:571418/81‑1 (MQ=255) ggATGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTg < 1:571420/81‑1 (MQ=255) aTGTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGcc > 2:571449/1‑81 (MQ=255) gTTAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGCCGc > 1:571460/1‑81 (MQ=255) ttAAAAAAAATGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGCCGCt < 2:571420/81‑1 (MQ=255) aaaaaaaTGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGCCGCTGtt < 2:571421/81‑1 (MQ=255) aaaTGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGCCGCTGTTGAtt < 2:571422/81‑1 (MQ=255) | GTTATCGCGGTAATAAATATGTCACTGACTTAAAATAACTTTGCCTGGAGCGACAAGGATGTTAAAAAAAACGTTACTGGCCTACACCATTGGTTTTGCCTTTTCTCCCCCAGCCAATGCAGATGGTATAGAGATTGCCGCTGTTGATT > NC_000913/3362749‑3362897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |