| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,583,237 | T→A | pseudogene (200/390 nt) | yrhA → | putative uncharacterized protein YrhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,583,237 | 0 | T | A | 100.0% | 38.8 / NA | 12 | pseudogene (200/390 nt) | yrhA | putative uncharacterized protein YrhA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (7/5); total (7/5) | |||||||||||
ATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTA > NC_000913/3583159‑3583308 | attcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTaaa < 2:624994/81‑1 (MQ=255) tAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAat > 1:625013/1‑81 (MQ=255) ccTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAatggatgg < 2:624995/81‑1 (MQ=255) gagaAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTc < 2:624996/81‑1 (MQ=255) tAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATg < 2:624997/80‑1 (MQ=255) aGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTAc > 2:625013/1‑80 (MQ=255) aGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGatta > 1:625010/1‑81 (MQ=255) gTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGattat > 1:625027/1‑81 (MQ=255) gAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGAt > 2:625008/1‑81 (MQ=255) gAATCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGAt > 2:625019/1‑81 (MQ=255) aTCAACCTGATTATCTTACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTc < 2:624998/81‑1 (MQ=255) tACTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTa > 2:625010/1‑80 (MQ=255) aCTTTTTAAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTa < 1:625000/79‑1 (MQ=255) | ATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGATTCCAGAACCTTCAGTTA > NC_000913/3583159‑3583308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |