| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 59,338 | C→T | intergenic (+59/+349) | yabQ → / ← rluA | protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 59,338 | 0 | C | T | 100.0% | 42.7 / NA | 14 | intergenic (+59/+349) | yabQ/rluA | protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (9/5); total (9/5) | |||||||||||
GAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCA > NC_000913/59264‑59411 | gAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAAt < 1:13063/80‑1 (MQ=255)gAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAAt < 2:13064/80‑1 (MQ=255) gCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGa > 2:158608/1‑78 (MQ=255) cAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGGAAGAc > 2:13083/1‑81 (MQ=255) aaTAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTg < 1:13065/81‑1 (MQ=255) aGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTGCat < 1:13066/80‑1 (MQ=255) gAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTGCATGATGAGCTa > 2:13085/1‑79 (MQ=255) aGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTATAATTAGAAAGACCTGCATGATGAGCTagag > 2:13090/1‑80 (MQ=255) aGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTGCATGATGAGCTagag > 1:13098/1‑80 (MQ=255) aCGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGt > 1:13087/1‑81 (MQ=255) ccccTTCAACCTTAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGAc < 2:13067/81‑1 (MQ=255) tAGCAGTAGCGTGGGATGATTTTACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtcgt > 1:13109/1‑81 (MQ=255) gggATGATTTTACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGa > 2:13104/1‑81 (MQ=255) atgatTTTACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCa > 2:13088/1‑81 (MQ=255) | GAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCA > NC_000913/59264‑59411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |