| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,110,248 | G→T | A107S (GCG→TCG) | cdh → | CDP‑diacylglycerol diphosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,110,248 | 0 | G | T | 96.7% | 102.5 / ‑3.5 | 30 | A107S (GCG→TCG) | cdh | CDP‑diacylglycerol diphosphatase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (15/14); minor base A (0/1); total (15/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
ATCGTATTAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGGCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGATCAACTCCC > NC_000913/4110174‑4110320 | atcgtatTAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGt > 2:764054/1‑80 (MQ=255)atcgtatTAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGt > 1:764061/1‑80 (MQ=255)atcgtatTAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGt > 1:764047/1‑80 (MQ=255) tatTAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGAttt > 2:764049/1‑81 (MQ=255) tAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTAt > 2:764062/1‑81 (MQ=255) aaCGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTAt < 1:764015/80‑1 (MQ=255) aCGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTAt > 1:764049/1‑79 (MQ=255) cTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCaaa < 2:764015/80‑1 (MQ=255) aaaGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAAt < 1:764017/81‑1 (MQ=255) aaaGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAAt < 1:764018/81‑1 (MQ=255) aGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATAc < 2:764018/81‑1 (MQ=255) gTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACg > 2:764055/1‑81 (MQ=255) ttgttgACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAg > 2:764059/1‑81 (MQ=255) tgttgACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAg < 1:764020/80‑1 (MQ=255) gttgACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGcc > 1:764065/1‑81 (MQ=255) gttgACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGcc > 1:764073/1‑81 (MQ=255) gATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTccc > 1:764071/1‑81 (MQ=255) gATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTccc < 2:764020/81‑1 (MQ=255) aTCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGACGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCg < 2:764021/81‑1 (MQ=255) ccTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGAt > 2:764065/1‑81 (MQ=255) tCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATcgc > 1:764074/1‑81 (MQ=255) aaCGCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATcgcgc < 2:764022/81‑1 (MQ=255) gCCGAACTTCTTTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGt < 1:764024/81‑1 (MQ=255) cttcttTTGGTTGGCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCttt < 2:764024/81‑1 (MQ=255) ttggttggCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCg < 1:764026/79‑1 (MQ=255) ttggttggCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGAt > 2:764053/1‑81 (MQ=255) tggttggCTTGGCAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGAt < 1:764027/80‑1 (MQ=255) ttggcttggtAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGATCAAc > 1:764069/1‑81 (MQ=255) cttggcAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGATCAACTccc < 2:764028/81‑1 (MQ=255) cttggcAGTCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGATCAACTccc < 1:764028/81‑1 (MQ=255) | ATCGTATTAACGGTACTGAAAGTCCTTTGTTGACCGATCCTTCAACGCCGAACTTCTTTTGGTTGGCTTGGCAGGCGCGTGATTTTATGAGCAAAAAATACGGCCAGCCGGTTCCCGATCGCGCGGTTTCTTTGGCGATCAACTCCC > NC_000913/4110174‑4110320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |