| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 611,479 | A→G | I339T (ATT→ACT) | fepA ← | ferric enterobactin outer membrane transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 611,479 | 0 | A | G | 94.7% | 55.7 / ‑3.6 | 19 | I339T (ATT→ACT) | fepA | ferric enterobactin outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (9/9); total (10/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 | |||||||||||
AGATCGATATCGACGAAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAATACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCACCGTTCCAGG > NC_000913/611404‑611554 | aGATCGATATCGACGAAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTAcgc < 1:120338/81‑1 (MQ=255) aTCGATATCGACGAAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTAcgc > 1:120372/1‑79 (MQ=255) atCGACGAAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACg > 1:120384/1‑81 (MQ=255) cgaAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGgtgt < 1:120339/81‑1 (MQ=255) gaAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGgtgtg > 2:120374/1‑81 (MQ=255) aaaTCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGgtgtgt < 1:120340/81‑1 (MQ=255) tCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCg < 1:120341/81‑1 (MQ=255) ccTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCg > 1:120375/1‑80 (MQ=255) tCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTg > 1:120378/1‑81 (MQ=255) aaaTTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCtgg < 1:120342/80‑1 (MQ=255) ccTTCGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCAc < 1:120343/80‑1 (MQ=255) cGGTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGt > 2:120385/1‑81 (MQ=255) ggTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGtt < 1:120344/81‑1 (MQ=255) ggTACCGCCCGCCAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGt > 2:120381/1‑80 (MQ=255) gccAGACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCa < 1:120345/81‑1 (MQ=255) gccAGACCTTCCGGAATACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCa > 2:120361/1‑81 (MQ=255) gACCTTCCGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCACCGt > 1:120364/1‑81 (MQ=255) ccGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCACCGTTCCAgg > 2:120388/1‑81 (MQ=255) ccGGAGTACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCACCGTTCCAg < 2:120346/80‑1 (MQ=255) | AGATCGATATCGACGAAATCCTGTGTCGCTTTTTCGTTAAATTTCCCTTCGGTACCGCCCGCCAGACCTTCCGGAATACGCGAGTTACGGGTGTGTTCGTACTGCACCCAGTTGCTGGTGGTCACGCCGTTATCCCAGCCACCGTTCCAGG > NC_000913/611404‑611554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |