| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 689,114 | C→T | intergenic (‑101/+229) | insH‑3 ← / ← lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 689,114 | 0 | C | T | 95.2% | 69.2 / ‑6.3 | 21 | intergenic (‑101/+229) | insH‑3/lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (12/8); minor base A (1/0); total (13/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGGTGCAACTAGGTTG > NC_000913/689045‑689191 | cttAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTcc > 2:134067/1‑81 (MQ=255) ttAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTcc > 2:134066/1‑80 (MQ=255) tAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGc > 2:134064/1‑80 (MQ=255) aCATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCaa < 2:134050/80‑1 (MQ=255) aTTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAAt > 1:134063/1‑81 (MQ=255) gCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATg > 1:134071/1‑81 (MQ=255) aaTGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCAc < 1:134051/80‑1 (MQ=255) aaGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCtttt < 1:134052/80‑1 (MQ=255) atatTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTg > 1:134070/1‑81 (MQ=255) atatTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTg > 1:134069/1‑81 (MQ=255) tatTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGACGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGc > 1:134077/1‑81 (MQ=255) atTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGc > 2:134072/1‑80 (MQ=255) cTGTTTTATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTAcc < 1:134053/80‑1 (MQ=255) ttttATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCt < 1:134054/80‑1 (MQ=255) ttATTGTTTGTTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGa > 1:134080/1‑81 (MQ=255) ttgtttgtTTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGAtt < 1:134055/80‑1 (MQ=255) tgtttgttTTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTAc > 1:134078/1‑81 (MQ=255) tgtttTTGCGAGATGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACtgt < 1:134056/80‑1 (MQ=255) gagaTGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGGTGCAAc > 2:134074/1‑79 (MQ=255) tGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGGTGCAACTAGGtt < 2:134057/81‑1 (MQ=255) tGCGTCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGGTGCAACTAGGtt > 2:134073/1‑81 (MQ=255) gcgtCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGGTGCAACTAGGTTg > 1:134083/1‑81 (MQ=255) | CTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTGTTTGTTTTTGCGAGATGCGCCGCACCATTCCGAAGCAAAATTCTTAAAATGCACTCTTTTAGTGCTACCGCTGGATTACTGTGGTGCAACTAGGTTG > NC_000913/689045‑689191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |