| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 752,782 | (T)6→5 | coding (14/567 nt) | ybgD ← | putative fimbrial protein YbgD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 752,777 | 0 | T | . | 100.0% | 45.6 / NA | 12 | coding (19/567 nt) | ybgD | putative fimbrial protein YbgD |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (3/9); total (3/9) | |||||||||||
AAGTGAATTTCGCCAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATT > NC_000913/752698‑752851 | aaGTGAATTTCGCCAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGtt < 2:160098/81‑1 (MQ=255) aaTTTCGCCAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGtttttg < 1:160099/80‑2 (MQ=255) aTTTCGCCAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGtttttgtc < 2:160100/81‑4 (MQ=255) gCCAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCttt < 2:160101/80‑1 (MQ=255) ccAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTaa < 1:160102/81‑1 (MQ=255) catcaGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACa < 2:160103/79‑1 (MQ=255) tcaGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGt < 1:160104/81‑1 (MQ=255) gcagcaTAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCt > 2:160124/1‑81 (MQ=255) aGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTAAAACATAACAGAGTCCTTTAAGGata > 2:160123/1‑79 (MQ=255) aCAGCAGAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGta < 1:160105/81‑1 (MQ=255) cagAGATACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGc < 2:160106/81‑1 (MQ=255) agaTACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTAc < 1:160107/81‑1 (MQ=255) gaTACGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACg > 2:160122/1‑81 (MQ=255) cGGCCAGTGCGGCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAg < 1:160108/81‑1 (MQ=255) gCCAATG‑TTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTAtt < 1:160109/81‑1 (MQ=255) | AAGTGAATTTCGCCAGAACCTTCATCAGCAGCATAAACAGGTGCAGTGAACAGCAGAGATACGGCCAGTGCGGCCAATGTTTTTTGTCCTTTAAACATAACAGAGTCCTTTAAGGATATAGAATAGGGGTATAGCTACGCCAGAATATCGTATT > NC_000913/752698‑752851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |