| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,181,866 | (T)5→4 | coding (964/1047 nt) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,181,862 | 0 | T | . | 100.0% | 67.6 / NA | 17 | coding (968/1047 nt) | potD | spermidine preferential ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (8/9); total (8/9) | |||||||||||
AACGTCCTGCTTTCAGCTTCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCATTTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTCTGGACTTAACAGCTTACGCGCCGC > NC_000913/1181785‑1181935 | aaCGTCCTGCTTTCAGCTTCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCAttt > 1:235569/1‑80 (MQ=255) cTTTCAGCTTCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTc < 1:235538/81‑1 (MQ=255) tCAGCTTCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAg > 1:235563/1‑80 (MQ=255) cAGCTTCTGATAATACTCTTCATAAATGCTACTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGc < 2:235539/80‑1 (MQ=255) gCTTCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATc > 2:235566/1‑81 (MQ=255) ttCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCg > 1:235564/1‑81 (MQ=255) cTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCgg < 1:235540/80‑1 (MQ=255) ataataCTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGt < 2:235541/79‑1 (MQ=255) taataCTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTa > 1:235571/1‑79 (MQ=255) taCTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAgtg > 2:235567/1‑81 (MQ=255) ctctTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAgtgt < 1:235542/80‑1 (MQ=255) ctTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGttt > 2:235559/1‑80 (MQ=255) ttCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGttt < 1:235543/79‑1 (MQ=255) tggctgCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTc > 1:235565/1‑81 (MQ=255) tggctgCGCCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTc < 1:235544/81‑1 (MQ=255) gcCAACGTCATTCTGCCATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTCTGGACt > 1:235568/1‑80 (MQ=255) ccATTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTCTGGACTTAACAGCTTAcgc < 2:235545/78‑1 (MQ=255) aTTCGCCA‑TTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTCTGGACTTAACAGCTTACGcgccgc < 1:235546/81‑1 (MQ=255) | AACGTCCTGCTTTCAGCTTCTGATAATACTCTTCATAAATGCTGCTGGCTGCGCCAACGTCATTCTGCCATTCGCCATTTTTAATGGTTTCAGCATCCGGGTAGAGTGTTTTATCGTTCGCCACTTCTGGACTTAACAGCTTACGCGCCGC > NC_000913/1181785‑1181935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |