Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,255,950 Δ1 bp coding (3/2868 nt) ycgV ← putative autotransporter adhesin YcgV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,255,9480C.93.8% 54.6 / ‑2.0 16coding (5/2868 nt)ycgVputative autotransporter adhesin YcgV
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base . (6/9);  minor base A (0/1);  total (6/10)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGATTTTTAATTCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATGCCCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATAT  >  NC_000913/1255891‑1256023
                                                         |                                                                           
cGGATTTTTAATTCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTAccc                                                     <  1:246220/81‑1 (MQ=255)
  gATTTTTAATTCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTAcc                                                      >  2:246240/1‑78 (MQ=255)
  gATTTTTAATTCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAg                                                   <  1:246221/81‑1 (MQ=255)
           ttCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGt                                          <  2:246222/81‑1 (MQ=255)
            tCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTc                                         >  2:246239/1‑81 (MQ=255)
                  agaCGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGa                                   >  2:246241/1‑81 (MQ=255)
                            cTTTGGTATTCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCa                           <  1:246224/79‑1 (MQ=255)
                            cTTTGGTATTCCCATTGTGTTGTTTGAT‑ACCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTc                            <  2:246223/78‑1 (MQ=255)
                                    ttCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTa                  <  1:246225/80‑1 (MQ=255)
                                    ttCCCATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACCATGGGTCTATGGATTTTGTCATTTTGTTTa                  >  2:246242/1‑80 (MQ=255)
                                      cccATTGTGTTGTTTGATG‑CAATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAAt               >  2:246243/1‑81 (MQ=255)
                                        cATTGTGTTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATc              >  1:246245/1‑80 (MQ=255)
                                            gtgtTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATg          <  1:246226/80‑1 (MQ=255)
                                            gtgtTGTTTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATg          <  2:246227/80‑1 (MQ=255)
                                               ttgttTGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGaat       <  2:246228/80‑1 (MQ=255)
                                                    tGATG‑CCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTCGTTTAAATCAATGAATAatat  <  2:246229/80‑1 (MQ=255)
                                                         |                                                                           
CGGATTTTTAATTCAGCGAGACGATCTGCTTTGGTATTCCCATTGTGTTGTTTGATGCCCATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATAT  >  NC_000913/1255891‑1256023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑