| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,435,728 | 0 | A | . | 100.0% | 71.9 / NA | 18 | intergenic (‑109/+32) | uspF/ompN | nucleotide binding filament protein/outer membrane porin N |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (11/7); total (11/7) | |||||||||||
TAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTA > NC_000913/1435652‑1435802 | tAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATCTAGATCAAAGGAGGAAGAATAAGCAGaaaag > 2:273135/1‑80 (MQ=255) gCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCg > 1:273123/1‑81 (MQ=255) aTGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAATGGAGGAAGAATAAGCAG‑AAAAGCCCGCCAt > 2:273132/1‑80 (MQ=255) acTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGc < 2:273110/81‑1 (MQ=255) gtgtAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCag < 1:273111/80‑1 (MQ=255) tgtAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCagg < 2:273112/80‑1 (MQ=255) aaTGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAggagga > 2:273127/1‑81 (MQ=255) aaTGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAggagga > 1:273134/1‑81 (MQ=255) aaTGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAggagga > 1:273151/1‑81 (MQ=255) aCGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGAttt < 1:273113/80‑1 (MQ=255) cacaTTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGa > 2:273133/1‑80 (MQ=255) caTTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATaa < 1:273114/81‑1 (MQ=255) tttttAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc > 1:273129/1‑81 (MQ=255) tttttAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc > 2:273142/1‑81 (MQ=255) aTCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGc > 2:273137/1‑81 (MQ=255) ggaAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatc < 1:273115/81‑1 (MQ=255) gaagaaTAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatca > 1:273140/1‑81 (MQ=255) agaaTAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATatcatc < 2:273116/81‑1 (MQ=255) aGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTa > 1:273139/1‑79 (MQ=255) | TAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGTA > NC_000913/1435652‑1435802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |