Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	168,921	Δ1 bp	coding (1438/2244 nt)	fhuA →	ferrichrome outer membrane transporter/phage receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	168,920	0	G	.	100.0%	98.0 / NA	24	coding (1437/2244 nt)	fhuA	ferrichrome outer membrane transporter/phage receptor
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (10/14);  total (10/14)

TTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGACCGATAAACGTG  >  NC_000913/168848‑168996                                                                         |                                                                             ttACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCAccc                                                                       >  2:40375/1‑79 (MQ=255)  tACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAg                                                                    >  1:40379/1‑81 (MQ=255)   aCCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTa                                                                     <  2:40334/79‑1 (MQ=255)    ccGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGc                                                                  <  2:40335/81‑1 (MQ=255)              aaTAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTAt                                                         <  2:40336/80‑1 (MQ=255)                           aaacGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATc                                            >  2:40382/1‑80 (MQ=255)                           aaacGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATc                                            >  2:40370/1‑80 (MQ=255)                            aacGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCATCCTAGGCGGTCGTTATGACTGGGCAGATc                                            >  2:40384/1‑79 (MQ=255)                              cGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAg                                         >  1:40376/1‑80 (MQ=255)                                ggCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGATATGACTGGGCAGATCAAGAAt                                      <  1:40337/81‑1 (MQ=255)                                   gTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAAtctc                                   >  1:40373/1‑81 (MQ=255)                                    tttATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATctct                                  <  1:40338/81‑1 (MQ=255)                                       aTGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTTGTTATGACTGGGCAGATCAAGAATCTCTTaa                               >  2:40394/1‑81 (MQ=255)                                       aTGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTaa                               >  2:40391/1‑81 (MQ=255)                                        tGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTaa                               <  1:40339/80‑1 (MQ=255)                                        tGTTCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAAc                              <  2:40340/81‑1 (MQ=255)                                          ttCAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACcg                            <  1:40341/81‑1 (MQ=255)                                            cAGGATCAGGCGCAGTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACcgc                           <  2:40342/80‑1 (MQ=255)                                                          gTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGAcc            <  2:40343/81‑1 (MQ=255)                                                          gTGGGATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGAcc            <  2:40344/81‑1 (MQ=255)                                                            gggATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGACCGa          >  1:40386/1‑81 (MQ=255)                                                              gATAAAGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGACCGATa        <  1:40345/81‑1 (MQ=255)                                                                  aaGTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGACCGATAAACg    <  2:40346/81‑1 (MQ=255)                                                                    gTGCT‑GTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGACCGATAAACGtg  <  2:40347/81‑1 (MQ=255)                                                                         |                                                                             TTACCGCATTCTGAATAAACAGAAACAAACGGGCGTTTATGTTCAGGATCAGGCGCAGTGGGATAAAGTGCTGGTCACCCTAGGCGGTCGTTATGACTGGGCAGATCAAGAATCTCTTAACCGCGTTGCCGGGACGACCGATAAACGTG  >  NC_000913/168848‑168996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑