| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,637,726 | (T)8→7 | coding (57/174 nt) | gnsB ← | Qin prophage; protein GnsB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,637,719 | 0 | T | . | 100.0% | 23.4 / NA | 7 | coding (64/174 nt) | gnsB | Qin prophage; protein GnsB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (5/2); total (5/2) | |||||||||||
ATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAATTTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTC > NC_000913/1637652‑1637788 | aTTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTtata > 1:301567/1‑80 (MQ=255) cccGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAg < 2:301555/80‑1 (MQ=255) cTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATAtt > 2:301569/1‑80 (MQ=255) cTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCAtt > 1:301570/1‑81 (MQ=255) tAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTc > 1:301568/1‑81 (MQ=255) tAAGGTCAATAA‑TTTTTTTGTTATATATTCAGATATAACTGCTTCTGCTTTTGTTTTTAAGTTTTCAATTTTCATCAtttt > 2:301577/1‑80 (MQ=255) aaGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCAttt < 2:301556/79‑1 (MQ=255) | ATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAATTTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTC > NC_000913/1637652‑1637788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |