Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,709,108	(A)6→5	coding (2190/2223 nt)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,709,103	0	A	.	100.0%	89.9 / NA	22	coding (2185/2223 nt)	rsxC	SoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (9/13);  total (9/13)

CAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAA  >  NC_000913/1709025‑1709179                                                                               |                                                                             cAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaa                                                                            <  1:311222/81‑1 (MQ=255)  aGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaa                                                                           <  1:311223/81‑1 (MQ=255)  aGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaa                                                                           <  2:311224/81‑1 (MQ=255)     cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaaagc                                                                        <  2:311225/81‑3 (MQ=255)        aTGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAgccgc                                                                    >  1:311257/1‑81 (MQ=255)              tACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCcagca                                                              <  1:311226/81‑1 (MQ=255)                        aCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTa                                                    <  2:311227/81‑1 (MQ=255)                             ttGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGa                                               <  1:311228/81‑1 (MQ=255)                                aTCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTGAACGAGGa                                            <  1:311230/81‑1 (MQ=255)                                aTCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAgg                                             <  2:311229/80‑1 (MQ=255)                                   cgcgCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGaat                                          <  1:311232/80‑3 (MQ=255)                                   cgcgCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACt                                          >  2:311270/1‑80 (MQ=255)                                   cgcgCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACt                                          <  2:311231/80‑1 (MQ=255)                                      gcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAt                                      >  1:311266/1‑81 (MQ=255)                                           gCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAt                                 >  2:311259/1‑81 (MQ=255)                                             ggCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAtt                                >  2:311264/1‑80 (MQ=255)                                             ggCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAtt                                >  2:311258/1‑80 (MQ=255)                                               cAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAg                             <  2:518558/81‑1 (MQ=255)                                                    gCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAta                         <  1:311233/80‑1 (MQ=255)                                                                gCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCt             >  2:311269/1‑80 (MQ=255)                                                                 cccGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCtt            <  2:311234/80‑1 (MQ=255)                                                                  ccGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTta           >  2:311272/1‑80 (MQ=255)                                                                   cgcgCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTtata         <  2:311235/81‑1 (MQ=255)                                                                    gcgcTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAc        <  2:311236/81‑1 (MQ=255)                                                                    gcgcTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATAc        >  1:311260/1‑81 (MQ=255)                                                                          aGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATaa  <  1:311237/81‑1 (MQ=255)                                                                               |                                                                             CAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAA  >  NC_000913/1709025‑1709179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑