| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,978,270 | Δ1 bp | intergenic (‑73/+248) | flhD ← / ← insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,978,267 | 0 | C | . | 100.0% | 58.5 / NA | 15 | intergenic (‑70/+251) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (4/11); total (4/11) | |||||||||||
GTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTT > NC_000913/1978190‑1978337 | gTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGcccg < 2:352542/81‑2 (MQ=255) tATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGcccgg < 1:352543/81‑3 (MQ=255) tGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGcccggt < 2:352544/80‑4 (MQ=255) gCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGcccggta > 2:352564/1‑76 (MQ=255) ttattCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTaaaa > 1:352565/1‑80 (MQ=255) ttCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAaat < 1:352545/80‑1 (MQ=255) cccaGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGc < 1:352546/81‑1 (MQ=255) cccaGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGc < 1:352547/81‑1 (MQ=255) ccaGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCa < 1:352548/81‑1 (MQ=255) ccAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAg < 2:352549/81‑1 (MQ=255) aaCTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑TCCGGTAAAAAATAATTAGCATTAGAATAGtt > 2:352568/1‑81 (MQ=255) cTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGc < 1:352550/81‑1 (MQ=255) tATTTTTATGCGGTTTCACCGAACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCg < 1:352551/79‑1 (MQ=255) tATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCt < 2:352552/80‑1 (MQ=255) ggTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATa < 1:352553/81‑1 (MQ=255) aCCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAg < 1:352554/80‑1 (MQ=255) cGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAac > 1:352567/1‑81 (MQ=255) gTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCtttt > 1:352572/1‑81 (MQ=255) tCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGttt < 1:352555/81‑1 (MQ=255) | GTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTT > NC_000913/1978190‑1978337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |