| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,563,530 | Δ1 bp | intergenic (+413/‑62) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,563,528 | 0 | G | . | 100.0% | 80.5 / NA | 20 | intergenic (+411/‑64) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (12/8); total (12/8) | |||||||||||
AGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTT > NC_000913/2563450‑2563602 | aGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTgg < 2:456142/80‑1 (MQ=255) ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTgg > 2:456165/1‑79 (MQ=255) gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCttt < 2:456143/80‑1 (MQ=255) aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGt > 1:456186/1‑81 (MQ=255) aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGt > 1:456205/1‑81 (MQ=255) aCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAAt > 1:456173/1‑81 (MQ=255) aaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGtt > 1:456163/1‑81 (MQ=255) aGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg < 2:456144/81‑1 (MQ=255) ttCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt < 2:456145/81‑1 (MQ=255) caacaacaaAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt > 2:456174/1‑81 (MQ=255) caacaaAATAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg > 1:456189/1‑80 (MQ=255) aaTAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgt > 2:456171/1‑80 (MQ=255) aTAAAGATGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGa < 1:456146/81‑1 (MQ=255) tGGGAGGTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAggagga > 1:456185/1‑81 (MQ=255) ggTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa > 1:456187/1‑81 (MQ=255) ggTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa > 2:456167/1‑81 (MQ=255) ggTAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa < 1:456147/81‑1 (MQ=255) tAAAAATGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATg < 1:456148/81‑1 (MQ=255) aaaTGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTTAACTGTGAAGGAGGACGCCATGaaa > 1:456175/1‑81 (MQ=255) aaaTGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaaa > 1:456182/1‑81 (MQ=255) aaTGAAACGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAAc < 1:456149/81‑1 (MQ=255) aaaCGGT‑GGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt < 1:456150/81‑1 (MQ=255) | AGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTT > NC_000913/2563450‑2563602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |