Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,887,571	Δ1 bp	intergenic (+163/+7)	sokX → / ← cysH	small RNA SokX/phosphoadenosine phosphosulfate reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,887,570	0	G	.	100.0%	97.9 / NA	24	intergenic (+162/+8)	sokX/cysH	small RNA SokX/phosphoadenosine phosphosulfate reductase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (17/7);  total (17/7)

TTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTCTTCCGCC  >  NC_000913/2887492‑2887638                                                                               |                                                                     ttCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCgca                                                                    <  2:523749/81‑3 (MQ=255)         tAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTAc                                                           >  2:523784/1‑81 (MQ=255)         tAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTAc                                                           >  1:523760/1‑81 (MQ=255)               cAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCg                                                     >  1:523790/1‑81 (MQ=255)                      gctgctCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAAcc                                              >  1:523775/1‑81 (MQ=255)                       ctgctCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAAcc                                              <  2:523750/80‑1 (MQ=255)                          ctCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCcaca                                          <  2:523751/81‑1 (MQ=255)                          ctCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCca                                            <  1:523752/79‑1 (MQ=255)                            cGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACAtt                                        >  2:523767/1‑81 (MQ=255)                              cAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTcc                                      <  2:523753/81‑1 (MQ=255)                               aaaaTAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTccc                                     >  1:523817/1‑81 (MQ=255)                                 aaTAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCtt                                   >  2:523795/1‑81 (MQ=255)                                   tAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCtttt                                 >  1:523773/1‑81 (MQ=255)                                        aCGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGc                            >  1:523779/1‑81 (MQ=255)                                           cccccATCATTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCa                          >  1:523793/1‑80 (MQ=255)                                               catcatTTCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGa                      >  2:523782/1‑80 (MQ=255)                                                    tttCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAAcgcg                >  2:523770/1‑81 (MQ=255)                                                      tCTGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGtt              >  2:523791/1‑81 (MQ=255)                                                        tGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTttc            >  1:523776/1‑81 (MQ=255)                                                        tGACAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTttc            >  1:523771/1‑81 (MQ=255)                                                          aCAGAGGCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTttctt          <  2:523754/81‑1 (MQ=255)                                                               ggCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTCTTcc     >  1:523774/1‑81 (MQ=255)                                                               ggCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTCTTcc     <  1:523755/81‑1 (MQ=255)                                                                gCGTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTCTTCCg    >  1:523778/1‑81 (MQ=255)                                                                  gTTTAATTTGTCC‑GCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTCTTCCGcc  <  1:523756/81‑1 (MQ=255)                                                                               |                                                                     TTCACGTTTAAAATCAGGAATGCTGCTCGCAAAATAAAAACGCCCCCATCATTTCTGACAGAGGCGTTTAATTTGTCCGGCAATATTTACCCTTCGTGTAACCCACATTCCCTTTTTAAGCCAAAGAAACGCGTTTCTTCTTCCGCC  >  NC_000913/2887492‑2887638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑