| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 311,887 | (C)5→4 | intergenic (‑551/‑225) | ecpR ← / → ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 311,883 | 0 | C | . | 100.0% | 76.1 / NA | 19 | intergenic (‑547/‑229) | ecpR/ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (8/11); total (8/11) | |||||||||||
GCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAGCCCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGATGGCCTTTTTGTCAG > NC_000913/311804‑311955 | gCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAGcc > 1:71962/1‑81 (MQ=255) caAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAGcccc > 1:71972/1‑80 (MQ=255) aaaaTGGTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAGccccaa < 2:71939/81‑3 (MQ=255) gTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCa < 2:71940/81‑1 (MQ=255) gTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCa < 1:71941/81‑1 (MQ=255) ggTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTaa < 1:71942/81‑1 (MQ=255) gtgtTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAg > 1:71981/1‑81 (MQ=255) tgtTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGt < 1:71943/81‑1 (MQ=255) ttCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTg < 2:71944/80‑1 (MQ=255) cATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAg > 2:71973/1‑81 (MQ=255) ccAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTa > 2:71977/1‑80 (MQ=255) aGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAg < 1:71945/81‑1 (MQ=255) aTGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCt < 2:71946/80‑1 (MQ=255) ggAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGc > 2:71986/1‑80 (MQ=255) gAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGc > 2:71978/1‑79 (MQ=255) aaaaTTGAACGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAg < 2:71947/81‑1 (MQ=255) cGGGCGTATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAg > 2:71980/1‑81 (MQ=255) tATGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGa < 2:71948/81‑1 (MQ=255) aTGTACGTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGAt > 1:71988/1‑81 (MQ=255) gTCATCTGTTCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGATGGCCtt > 2:71985/1‑81 (MQ=255) ttCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGATGGCCTTTTTGTCa < 2:71949/80‑1 (MQ=255) ttCGGTAAG‑CCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGATGGCCTTTTTGTCAg < 2:71950/81‑1 (MQ=255) | GCACAAAATGGTTACAGGTGTTCATTCCAATAAGTAATGGAAAATTGAACGGGCGTATGTACGTCATCTGTTCGGTAAGCCCCCAAGAGCCAGATTAAGTGAAGTTAAACGAAGGCTGCCAGCTGTCACAGGAACGATGGCCTTTTTGTCAG > NC_000913/311804‑311955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |