Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,998,759	Δ1 bp	coding (70/795 nt)	ygeQ ←	protein YgeQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,998,756	0	C	.	100.0%	66.2 / NA	17	coding (73/795 nt)	ygeQ	protein YgeQ
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (6/11);  total (6/11)

CGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGATTTCCCTTTC  >  NC_000913/2998682‑2998826                                                                           |                                                                       cGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTGccctgtc                                                                  >  2:547196/1‑77 (MQ=255)       ataaCTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTgg                                                           <  2:547171/81‑1 (MQ=255)          aCTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCAt                                                        <  1:547172/81‑1 (MQ=255)              ttATCTGTTGCTGCCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCAtgt                                                      <  1:547173/79‑1 (MQ=255)                aTCTGTTGCTGCCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCg                                                  >  2:547195/1‑81 (MQ=255)                    gTTGCTGCCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCAc                                               >  2:547194/1‑80 (MQ=255)                          gcCCCCGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAata                                        >  2:547198/1‑81 (MQ=255)                           cccccGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAat                                         <  1:562657/79‑1 (MQ=255)                              ccGTGGAATTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATAcc                                    <  2:547174/81‑1 (MQ=255)                                    aaTTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAg                              <  1:547175/81‑1 (MQ=255)                                     aTTAAGAATATTAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGc                             <  2:547176/81‑1 (MQ=255)                                            atattAAATACAGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAagag                      <  2:547177/78‑1 (MQ=255)                                                       aGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGAt           <  2:547179/81‑1 (MQ=255)                                                       aGATTCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATA‑CAGCGAGCAGAAGAGTTAATGCAGAtt          <  1:547178/81‑1 (MQ=255)                                                           tCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGATTTcc       >  2:547199/1‑81 (MQ=255)                                                           tCACTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGATTTcc       >  2:547200/1‑81 (MQ=255)                                                             aCTCGTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGATTTCCCt     >  2:547206/1‑81 (MQ=255)                                                                 gTCACTTCTG‑CCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGATTTCCCTTTc  <  1:547180/80‑1 (MQ=255)                                                                           |                                                                       CGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGCAGAAGAGTTAATGCAGATTTCCCTTTC  >  NC_000913/2998682‑2998826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑