| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,112,540 | Δ1 bp | coding (226/441 nt) | yiiR → | DUF805 domain‑containing protein YiiR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,112,538 | 0 | G | . | 96.0% | 94.6 / ‑1.3 | 25 | coding (224/441 nt) | yiiR | DUF805 domain‑containing protein YiiR |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (10/14); total (11/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
TTTTGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATG > NC_000913/4112459‑4112610 | ttttGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATgg > 1:832300/1‑81 (MQ=255)ttttGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATgg > 1:832322/1‑81 (MQ=255) ttGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATggc < 2:832263/80‑2 (MQ=255) tGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTCACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATggcct > 1:832316/1‑78 (MQ=255) tGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATggca < 1:832264/80‑3 (MQ=255) cTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCAttt > 2:832325/1‑81 (MQ=255) tgtgtgCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCt > 2:832309/1‑80 (MQ=255) gtgtgCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCtga > 2:832312/1‑81 (MQ=255) tgcttgctCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCtgatga < 2:832265/81‑1 (MQ=255) tgcttgctCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCtgatg < 1:832266/80‑1 (MQ=255) ttgctCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATtg > 1:832307/1‑81 (MQ=255) gCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGt < 1:832267/79‑1 (MQ=255) gCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTgg < 2:832268/81‑1 (MQ=255) gCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTg < 2:832269/80‑1 (MQ=255) cGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATgctgct < 2:832270/81‑1 (MQ=255) gTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCgg < 2:832271/81‑1 (MQ=255) cTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTaa > 2:832299/1‑81 (MQ=255) ttAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTg < 1:832272/81‑1 (MQ=255) aaGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTgg < 2:832274/80‑1 (MQ=255) aaGCGCTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTgg < 1:832273/80‑1 (MQ=255) cTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGAtt < 1:832275/81‑1 (MQ=255) cTTGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGAtt > 2:832330/1‑81 (MQ=255) ttGCATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGAttt > 2:832338/1‑81 (MQ=255) cATGATCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTa < 1:832276/80‑1 (MQ=255) aTCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCggg > 1:832332/1‑81 (MQ=255) aTCGCGGGCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCgg < 2:832277/80‑1 (MQ=255) ggCGTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTg > 1:832323/1‑81 (MQ=255) gTTCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTTGCGGGTAACTGCGCGATTTTACCGGGTGTCTGGc > 2:832328/1‑80 (MQ=255) tCCGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGCAACTGGGCGATTTTACCGGGTGTCTGGCAAt > 2:832329/1‑81 (MQ=255) cGGCGCAT‑GGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATg < 2:832278/80‑1 (MQ=255) | TTTTGCCTTGTGTGCTTGCTCTGGCCAACAGCGGCAGTAACTGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACCGGGTGTCTGGCAATG > NC_000913/4112459‑4112610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |