| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,333,425 | Δ1 bp | coding (526/669 nt) | basR ← | DNA‑binding transcriptional dual regulator BasR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,333,424 | 0 | T | . | 96.9% | 122.1 / ‑2.0 | 32 | coding (527/669 nt) | basR | DNA‑binding transcriptional dual regulator BasR |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (18/13); total (19/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
GCCCACTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGTTGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATATTCTTTGGGC > NC_000913/4333345‑4333498 | gCCCACTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGtg > 2:890846/1‑80 (MQ=255) cccACTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGtgt < 2:890807/81‑3 (MQ=255) cccACTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGtg > 1:890844/1‑79 (MQ=255) aCTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGtgta > 2:890845/1‑76 (MQ=255) aCTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTaga < 2:890808/81‑1 (MQ=255) ttGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGaa > 2:890863/1‑81 (MQ=255) gTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAAt < 1:890809/80‑1 (MQ=255) tCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAAtt < 2:890810/80‑1 (MQ=255) cgcAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTccc > 1:890853/1‑81 (MQ=255) aGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGAt > 1:890811/1‑81 (MQ=255) aTTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATg > 1:890850/1‑80 (MQ=255) aTTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGc < 2:890812/81‑1 (MQ=255) aTTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGc < 2:890813/81‑1 (MQ=255) ttGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCa > 1:890905/1‑81 (MQ=255) tgtgGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCAc > 1:890856/1‑81 (MQ=255) tgGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCAcc < 1:890814/80‑1 (MQ=255) tgGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCg > 1:890878/1‑81 (MQ=255) aCTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGTTGTAGAGAATTTCCCGATGCACCGGActgcct > 2:890865/1‑81 (MQ=255) ccAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCttt > 1:890869/1‑81 (MQ=255) ccAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCttt > 2:890855/1‑81 (MQ=255) cAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTg < 1:890815/81‑1 (MQ=255) gggTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAg > 2:890876/1‑81 (MQ=255) tgtTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCAt > 1:890879/1‑81 (MQ=255) ttGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCAtt > 2:890851/1‑80 (MQ=255) ttGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTa < 2:890816/81‑1 (MQ=255) tCGAGGGTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCg > 2:890864/1‑81 (MQ=255) gggTTCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGAc < 2:890817/81‑1 (MQ=255) tCATTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGAcag > 1:890858/1‑79 (MQ=255) aTTGTCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGAcagca > 2:890877/1‑79 (MQ=255) tCCCAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCat < 2:890818/81‑1 (MQ=255) ccAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCatat > 2:890870/1‑81 (MQ=255) cAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATAtt < 2:890820/81‑1 (MQ=255) cAGTTATAGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATAtt < 1:890819/81‑1 (MQ=255) tataGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATATTCttt > 2:890919/1‑81 (MQ=255) aGATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATATTCTTTggg > 1:890872/1‑81 (MQ=255) gATGTCG‑TGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATATTCTTTGGGc < 2:890821/81‑1 (MQ=255) | GCCCACTTTGTCGCGCAGATTGTGGATATGCACTTCCAGGGTGTTGGTCGAGGGTTCATTGTCCCAGTTATAGATGTCGTTGTAGAGAATTTCCCGATGCACCGGACTGCCTGCTTTGAGCATTAACCGTGACAGCAGAGCATATTCTTTGGGC > NC_000913/4333345‑4333498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |