| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,360,319 | Δ1 bp | intergenic (‑288/+77) | cadB ← / ← cadC | lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,360,318 | 0 | C | . | 100.0% | 72.0 / NA | 18 | intergenic (‑287/+78) | cadB/cadC | lysine:cadaverine antiporter/DNA‑binding transcriptional activator CadC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/9); total (9/9) | |||||||||||
ACATTTAATGTTTACAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTGCCGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCATAAATCAACCCGGAGT > NC_000913/4360240‑4360392 | aCATTTAATGTTTACAATGGATTGCGTGACATTCCCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTGcg > 1:897179/1‑79 (MQ=255) aaTGTTTACAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACat < 1:897159/80‑1 (MQ=255) tGTTTACAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACatat > 1:897184/1‑80 (MQ=255) tttACAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACAtattat < 1:897160/81‑1 (MQ=255) tttACAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACAtatta > 2:897180/1‑80 (MQ=255) cAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATAcc < 1:897161/80‑1 (MQ=255) cAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATAcc > 2:897182/1‑80 (MQ=255) gCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACa > 1:897181/1‑81 (MQ=255) cGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACAt < 1:897162/81‑1 (MQ=255) tGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACATAc < 2:897163/81‑1 (MQ=255) ctGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTc > 1:897177/1‑80 (MQ=255) gTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTcaa < 2:897164/79‑1 (MQ=255) gTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTca < 1:897165/78‑1 (MQ=255) tGTAATAAAAATTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATAttt < 1:897166/81‑1 (MQ=255) aaaaTTATGCGGCAAATAAATTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCa > 1:897195/1‑81 (MQ=255) aaataaatTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCATAAATCAACCCg > 1:897191/1‑80 (MQ=255) aaataaatTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCATAAATCAACCCg > 1:897220/1‑80 (MQ=255) ataaatTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCATAAATCAACCCGGAg < 1:897167/81‑1 (MQ=255) aaatTG‑CGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCATAAATCAACCCGGAGt > 2:897187/1‑80 (MQ=255) | ACATTTAATGTTTACAATGGATTGCGTGACATTCTCTGGTTAAATTTATGTAATAAAAATTATGCGGCAAATAAATTGCCGCAACATATTATACCAACAGGAACATACAAAAACTCAACAACAAATATTTCCGAGCATAAATCAACCCGGAGT > NC_000913/4360240‑4360392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |