| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 571,853 | Δ1 bp | coding (400/798 nt) | ybcM → | DLP12 prophage; putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 571,850 | 0 | A | . | 100.0% | 45.5 / NA | 12 | coding (397/798 nt) | ybcM | DLP12 prophage; putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (6/6); total (6/6) | |||||||||||
TTTACCTCAGAATCCTGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACTAAAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAGGAGTGAATCATGTTAATCATTTAC > NC_000913/571777‑571916 | tttACCTCAGAATCCTGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACTaaattc < 1:125668/79‑4 (MQ=255)tttACCTCAGAATCCTGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAg > 2:125692/1‑81 (MQ=255) tACCTCAGAATCCTGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAg > 1:125688/1‑79 (MQ=255) ttgGGAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCg < 2:125669/81‑1 (MQ=255) gggAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGt > 1:125694/1‑80 (MQ=255) aGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAgg < 1:125670/81‑1 (MQ=255) aGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAgg < 2:125671/81‑1 (MQ=255) aaCTAAAAACATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAGGAGt > 2:125672/1‑81 (MQ=255) aaaCATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAGGAGTGAATCa < 1:125673/81‑1 (MQ=255) aaCATCTGTTTCCCGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAACGGGCGTTCTACTTTCGTTAGGAGTGAATCAt > 2:125687/1‑81 (MQ=255) cccGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAGGAGTGAATCATGTTAATCAtt < 2:125674/80‑1 (MQ=255) ccGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAGGAGTGAATCATGTTAATCAttt < 2:125675/80‑1 (MQ=255) cGAGGCTTCTCAACT‑AAATTCAGGAGCACTTAGCAATGGGCGTTCTACTCTCGTTAGGAGTGAATCATGTTAATCATTTAc > 2:125696/1‑81 (MQ=255) | TTTACCTCAGAATCCTGAGTTAATATATTGTTGGGAGCAACTAAAAACATCTGTTTCCCGAGGCTTCTCAACTAAAATTCAGGAGCACTTAGCAATGGGCGTTCTACTTTCGTTAGGAGTGAATCATGTTAATCATTTAC > NC_000913/571777‑571916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |