| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,121,231 | (A)8→9 | intergenic (‑276/+11) | bssS ← / ← dinI | regulator of biofilm formation/DNA damage‑inducible protein I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,121,223 | 1 | . | A | 90.9% | 30.8 / ‑2.8 | 11 | intergenic (‑268/+19) | bssS/dinI | regulator of biofilm formation/DNA damage‑inducible protein I |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (6/4); total (6/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
GTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑C‑AAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGGAGAATTTCAC > NC_000913/1121146‑1121297 | gtgCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑C‑aa > 1:225112/1‑80 (MQ=255) tgCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑C‑aaaa < 1:225099/81‑1 (MQ=255) gAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑CAAAAAAAAATCACTg > 2:225122/1‑80 (MQ=255) tttGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGAc > 2:225121/1‑80 (MQ=255) ttGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACa > 1:225114/1‑80 (MQ=255) aaaaTTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTc < 2:519038/80‑1 (MQ=255) aaaataaaaAAGCCGGGGCGACCCGGAA‑AAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTccc < 2:225100/81‑1 (MQ=255) aataaaaAAGCCGGGGCGACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCAc < 2:225101/81‑1 (MQ=255) cGGGGCGACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGgag < 1:225102/81‑1 (MQ=255) gACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGGAGAAttt > 1:225116/1‑80 (MQ=255) gACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGGAGAAttt > 1:225118/1‑80 (MQ=255) gACCCGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGGAGAAttt > 2:225115/1‑80 (MQ=255) cccGG‑CAAAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGGAGAATTTCAc < 2:225103/81‑1 (MQ=255) | GTGCAATTATTTTGAGGAAGTGTAGAAATTTTGTACTCAAAATTCGTAAGTAAAATAAAAAAGCCGGGGCGACCCGG‑C‑AAAAAAAATCACTGCATATTATTCGCTGACAAACCAGTCATCGGCGCTTTCCCACGTTTCCTGGAGAATTTCAC > NC_000913/1121146‑1121297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |