| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,302,297 | (A)6→7 | coding (1116/1632 nt) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,302,291 | 1 | . | A | 100.0% | 64.6 / NA | 19 | A370A (GCG→GCA) | oppA | oligopeptide ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (9/10); total (9/10) | |||||||||||
ACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCG‑AAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGAT > NC_000913/1302211‑1302366 | acTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCg < 2:253378/81‑1 (MQ=255) cACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCG‑aaa < 1:253381/80‑1 (MQ=255) cACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCG‑aaa < 2:253380/80‑1 (MQ=255) cACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCG‑aa < 2:253379/79‑1 (MQ=255) tataCTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCG‑aaaaaaact > 1:253402/1‑78 (MQ=255) cTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAActgctg > 2:253401/1‑81 (MQ=255) cTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAActgctg < 2:253382/81‑1 (MQ=255) cTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAActgct < 1:253383/80‑1 (MQ=255) aTGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTgctggct > 1:253406/1‑81 (MQ=255) gcAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGc < 1:253384/81‑1 (MQ=255) aaTTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGt > 1:253411/1‑81 (MQ=255) aaTTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGt > 2:253408/1‑81 (MQ=255) ccAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGa > 1:253414/1‑81 (MQ=255) cAGAATGGTTTAGCTGGAGCCAGGAAAGACGTAACGAGGTAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGAc < 1:253385/81‑1 (MQ=255) aaTGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACaaa > 1:253404/1‑81 (MQ=255) aaTGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACaaa > 2:253409/1‑81 (MQ=255) tGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTg < 2:253386/80‑1 (MQ=255) gCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGAc < 2:253387/80‑1 (MQ=255) gCCAGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAAc < 2:253388/81‑1 (MQ=255) aGGAAAAACGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCtg < 1:253389/81‑1 (MQ=255) aaaaaCGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCtgttg < 2:253390/81‑1 (MQ=255) aaCGTAACGAAGAAGCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGtat < 2:253391/81‑1 (MQ=255) aagaagCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTcc > 2:253419/1‑81 (MQ=255) aagCGAAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGAt > 1:253417/1‑81 (MQ=255) | ACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCG‑AAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGAT > NC_000913/1302211‑1302366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |