| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,779,491 | (T)8→9 | intergenic (‑190/‑126) | ydiP ← / → ydiQ | putative DNA‑binding transcriptional regulator YdiP/putative electron transfer flavoprotein subunit YdiQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,779,483 | 1 | . | T | 95.5% | 73.8 / ‑3.9 | 22 | intergenic (‑182/‑134) | ydiP/ydiQ | putative DNA‑binding transcriptional regulator YdiP/putative electron transfer flavoprotein subunit YdiQ |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (12/9); total (13/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑TTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTAT > NC_000913/1779412‑1779556 | acTGAATGCAAGATTGTACGGTCATGGAGTAACTATATTGCTGCAAATTGCACTTTTGTTTTAGCGATCGCA‑ttttttttt > 1:321668/1‑80 (MQ=255) cTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑tttttttttg > 2:321669/1‑79 (MQ=255) gAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑tttttttttgc > 2:321667/1‑77 (MQ=255) gCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAt > 1:321670/1‑81 (MQ=255) aGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttgt < 1:321646/81‑1 (MQ=255) cGGTCATGGAATAACTATATAGCCGCAAATTGCAGTTTTGTTTTAGCGATCGCA‑TTTTTGTTGCACGATTATTGGCTAgg > 2:321674/1‑80 (MQ=255) ggTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAgg > 2:321695/1‑80 (MQ=255) ggTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGa < 1:321648/81‑1 (MQ=255) ggTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGa < 2:321647/81‑1 (MQ=255) gTCATGGAACAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGa > 2:321681/1‑80 (MQ=255) aCTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGc < 2:321649/80‑1 (MQ=255) tataTTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTCCAAAATGTTTGGCACGAAAAACAGCTGCCTcc > 1:321684/1‑81 (MQ=255) tatTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGt < 1:321650/81‑1 (MQ=255) atTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTc > 1:321671/1‑81 (MQ=255) ttGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTc > 2:321675/1‑80 (MQ=255) tGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCg > 1:321672/1‑80 (MQ=255) ccGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaaa < 2:321651/81‑1 (MQ=255) cAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAAcc < 1:321652/81‑1 (MQ=255) gCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCAc > 2:321678/1‑81 (MQ=255) cACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCAcc < 1:321653/81‑1 (MQ=255) ttttGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGc > 1:321677/1‑80 (MQ=255) ttttGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGc > 1:321679/1‑80 (MQ=255) ttAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGca > 1:321673/1‑80 (MQ=255) gCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACt < 1:321654/81‑1 (MQ=255) gATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTAt > 2:321680/1‑81 (MQ=255) | ACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑TTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTAT > NC_000913/1779412‑1779556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |