| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,838,080 | (T)7→8 | coding (869/1536 nt) | ynjC → | putative ABC transporter membrane subunit YnjC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,838,073 | 1 | . | T | 95.5% | 72.5 / NA | 22 | I288F (ATT→TTT) | ynjC | putative ABC transporter membrane subunit YnjC |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base T (9/12); minor base G (0/1); total (9/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCTGGCGGCGCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑TTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGACGATCAA > NC_000913/1837995‑1838143 | aGCTGGCGGCGCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑tt > 1:330404/1‑81 (MQ=255) tGGCGGCGCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑ttttt > 1:330424/1‑81 (MQ=255) ggcggcGCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑tttttt > 1:330410/1‑81 (MQ=255) ggcggcGCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑tttttt > 1:330411/1‑81 (MQ=255) gcggcgCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑tttttt < 1:330373/80‑1 (MQ=255) gcggcgCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTCTATTGCCGGGCAATACGCTGGCGA‑ttttttt > 2:330414/1‑81 (MQ=255) ggcgCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑tttttttta > 1:330397/1‑79 (MQ=255) ggcgCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑tttttttta < 2:330374/81‑3 (MQ=255) ttCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAAcc < 2:330375/81‑1 (MQ=255) ccccGCGTAGATGTCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCg < 2:330376/80‑1 (MQ=255) cccGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGgt < 2:944807/81‑1 (MQ=255) gcgTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGtgtg > 1:330401/1‑81 (MQ=255) cgTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGc > 2:330408/1‑81 (MQ=255) ttCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGtt < 2:330377/81‑1 (MQ=255) tCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTc > 1:330399/1‑81 (MQ=255) gCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTct < 1:330378/80‑1 (MQ=255) ccTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGc < 2:330379/81‑1 (MQ=255) tGCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGa > 1:330416/1‑81 (MQ=255) gCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGAt > 2:330419/1‑81 (MQ=255) gCCACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGAt > 2:330405/1‑81 (MQ=255) cACGCCTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATcc < 1:330380/81‑1 (MQ=255) aagCCTTTATTGCCGGGCAATACGCTGGCGAGTTTATTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCt < 2:330381/79‑1 (MQ=255) ccTTTATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTcgc < 1:330382/81‑1 (MQ=255) ttATTGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGa > 1:330415/1‑81 (MQ=255) ttGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATc < 2:330383/80‑1 (MQ=255) ttGCCGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATc < 2:330384/80‑1 (MQ=255) cGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTcg < 2:330385/81‑1 (MQ=255) cGGGCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTc > 1:330417/1‑80 (MQ=255) ggCAATACGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTcgac < 2:330386/81‑1 (MQ=255) aCGCTGGCGATTTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGACGATCaa > 2:330409/1‑81 (MQ=255) | AGCTGGCGGCGCACTATTCCCCGCGTAGATGGCGTTCGCAAGCCTGCCACGCCTTTATTGCCGGGCAATACGCTGGCGA‑TTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGACGATCAA > NC_000913/1837995‑1838143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |