Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,312,788	(T)6→7	intergenic (‑39/‑296)	ompC ← / → micF	outer membrane porin C/small regulatory RNA MicF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,312,782	1	.	T	100.0%	31.0 / NA	10	intergenic (‑33/‑302)	ompC/micF	outer membrane porin C/small regulatory RNA MicF
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (4/6);  total (4/6)

CCAGCAGAGCTGGGACCAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGC‑TTTTTTATGCCACTGCATACTGATTAACCCTCATTAATCAGTCGGCAAGTCCATTCTCCCC  >  NC_000913/2312707‑2312843                                                                             |                                                              ccAGCAGAGCTGGGACCAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGC‑ttttt                                                          <  2:409960/81‑1 (MQ=255)  cagcagAGCTGGGACCAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGC‑tttttt                                                         <  1:409961/81‑1 (MQ=255)      agagCTGGGACCAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGC‑tttttttatg                                                     <  1:409962/81‑5 (MQ=255)                ccAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATa                                            <  2:409963/81‑1 (MQ=255)                 cAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATAc                                           <  2:409964/81‑1 (MQ=255)                          cAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAAcc                                  <  1:409965/81‑1 (MQ=255)                             tACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTc                               <  1:409966/81‑1 (MQ=255)                              aCTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTCa                              >  2:409981/1‑81 (MQ=255)                                  tAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTCATTaa                          >  2:409984/1‑81 (MQ=255)                                             ttattaACCCTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTCATTAATCAGTCGGCaa               <  2:409967/81‑1 (MQ=255)                                                     ccTCTGTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTCATTAATCAGTCGGCAAGTCCATtc       >  1:409982/1‑81 (MQ=255)                                                          gTTATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTCATTAATCAGTCGGCAAGTCCATTCTccc   >  2:409995/1‑80 (MQ=255)                                                           ttATATGCCTTTATTTGCTTTTTTTATGCCACTGCATACTGATTAACCCTCATTAATCAGTCGGCAAGTCCATTCTcccc  <  1:409968/80‑1 (MQ=255)                                                                             |                                                              CCAGCAGAGCTGGGACCAGGAGGGACAGTACTTTAACTTTCATGTTATTAACCCTCTGTTATATGCCTTTATTTGC‑TTTTTTATGCCACTGCATACTGATTAACCCTCATTAATCAGTCGGCAAGTCCATTCTCCCC  >  NC_000913/2312707‑2312843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑