| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,083,832 | (A)7→8 | intergenic (‑35/+103) | speB ← / ← speA | agmatinase/arginine decarboxylase, biosynthetic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,083,825 | 1 | . | A | 93.8% | 107.1 / 0.4 | 32 | intergenic (‑28/+110) | speB/speA | agmatinase/arginine decarboxylase, biosynthetic |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (19/11); total (20/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑AAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCA > NC_000913/3083745‑3083900 | ccgaaGGCATTGGAAACCAGTAAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGatat < 1:567141/78‑1 (MQ=255)ccAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGatat < 1:567140/81‑1 (MQ=255) aaGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑aaa < 2:567143/81‑1 (MQ=255) aaGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑aaa < 2:567142/81‑1 (MQ=255) cATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑aaaaaa > 1:567201/1‑80 (MQ=255) aTTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑aaaaaaaa > 1:567178/1‑80 (MQ=255) ggAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑AAAAAAAaccc > 2:567180/1‑80 (MQ=255) gAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑AAAAAAAaccct < 1:567144/81‑3 (MQ=255) aaaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCtt > 2:567179/1‑81 (MQ=255) aaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTc < 1:567145/81‑1 (MQ=255) aaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTc > 2:567198/1‑81 (MQ=255) aaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTc > 2:567191/1‑81 (MQ=255) aaCCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTc > 2:567181/1‑81 (MQ=255) ccAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCcg > 1:567205/1‑81 (MQ=255) cAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCcgc > 2:567147/1‑81 (MQ=255) cAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCcgc < 1:567146/81‑1 (MQ=255) aGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCcgcg > 2:567184/1‑81 (MQ=255) aGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGcgtcgt < 2:567148/81‑1 (MQ=255) gTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGtt < 1:567149/81‑1 (MQ=255) aTCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAgg > 2:567195/1‑81 (MQ=255) aTCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAgg > 2:567182/1‑81 (MQ=255) ttGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCcgac < 2:567150/81‑1 (MQ=255) ttGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCcga < 2:567151/80‑1 (MQ=255) aCCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAgg > 1:567185/1‑79 (MQ=255) aaGGTGCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGt > 2:567199/1‑81 (MQ=255) aGGTGCTCATGGATGGGCTCCTATTAAAAAGTCGATGTAAAAAAAACCCTTCCGCGTCGTTAGGACCGACGAGGAAGGGt < 2:567152/80‑1 (MQ=255) gCTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGAt > 2:567197/1‑81 (MQ=255) cTCATGGATGGACTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGAtt > 1:567210/1‑81 (MQ=255) atggaCTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTcaca < 2:567153/81‑1 (MQ=255) atggaCTCCTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTcac > 2:567173/1‑80 (MQ=255) cTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAAt < 2:567154/79‑1 (MQ=255) cTATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtg > 1:567207/1‑81 (MQ=255) tATTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtgt > 1:567189/1‑81 (MQ=255) aTTACAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATtgtg > 1:567202/1‑81 (MQ=255) aCAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCg > 2:567196/1‑81 (MQ=255) cAAAGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCg > 1:567193/1‑80 (MQ=255) aGTCGATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGAtt < 1:567155/81‑1 (MQ=255) gATATAAAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCa < 1:567156/81‑1 (MQ=255) | CCAAAGGCATTGGAAACCAGTGAGTTATCGTATTGATGACCTAAGGTGCTCATGGATGGACTCCTATTACAAAGTCGATAT‑AAAAAAACCCTTCCGCGTCGTTAGGCCCGACGAGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCA > NC_000913/3083745‑3083900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |