| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,837,621 | (T)5→6 | coding (669/1185 nt) | setC → | putative arabinose exporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,837,616 | 1 | . | T | 96.0% | 83.9 / ‑3.2 | 25 | coding (664/1185 nt) | setC | putative arabinose exporter |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (10/14); total (10/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
CAATACAAAGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑TTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCTATTTATTATT > NC_000913/3837536‑3837687 | cAATACAAAGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAc > 1:756674/1‑81 (MQ=255) aaTACAAAGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑t > 1:756692/1‑81 (MQ=255) aTACAAAGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑tt > 1:756734/1‑81 (MQ=255) aCAAAGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑tttt > 1:756678/1‑81 (MQ=255) aaGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑ttttttg < 2:756647/81‑3 (MQ=255) aGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑ttttttgt > 1:756679/1‑78 (MQ=255) aaTATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGt < 2:756648/81‑1 (MQ=255) tatTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCt < 2:756649/81‑1 (MQ=255) ttCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTg < 1:756650/80‑1 (MQ=255) tCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAatg < 1:756651/81‑1 (MQ=255) tCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAat > 2:756690/1‑80 (MQ=255) cGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAatga > 1:756693/1‑81 (MQ=255) ccAACCCGTAGAAATTTTACTCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTggg > 2:756680/1‑81 (MQ=255) aCCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGggcgg > 1:756686/1‑81 (MQ=255) ccGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGgcggcg < 1:756652/81‑1 (MQ=255) aGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGaat > 2:756685/1‑80 (MQ=255) aTTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAAtct > 1:756689/1‑81 (MQ=255) cccTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACAt < 2:756654/81‑1 (MQ=255) cccTCCACCCACAGGAAGCGGGATACGCGGCTAC‑TTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACAt < 1:756653/80‑1 (MQ=255) ccTCCACCCACAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATg < 2:756655/81‑1 (MQ=255) cacccacAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGAt < 2:756656/79‑1 (MQ=255) acccacAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATaaa > 1:756688/1‑81 (MQ=255) cccacAGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAat < 2:756657/81‑1 (MQ=255) aGGAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGcc > 1:756699/1‑81 (MQ=255) ggAAGCGGGATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCg < 2:756658/81‑1 (MQ=255) gggATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCtattt < 2:756659/81‑1 (MQ=255) gggATACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCtattt < 2:756660/81‑1 (MQ=255) aTACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCtatttat > 2:756696/1‑80 (MQ=255) tACGCGGCTACTTTTTTGTGGTCTGTTCAATGATGTTGGCGGCGAATAATCTCTACATGATAAATATGCCGCTATttatta < 2:756661/81‑1 (MQ=255) cgcgGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCTATTTattatt < 1:756662/81‑1 (MQ=255) gcgGCTACTTTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCTATTTattatt > 1:756700/1‑80 (MQ=255) | CAATACAAAGAAATATTCCTGTCGTTACCCAACCCGTAGAAATTTTACCCTCCACCCACAGGAAGCGGGATACGCGGCTAC‑TTTTTGTGGTCTGTTCAATGATGTGGGCGGCGAATAATCTCTACATGATAAATATGCCGCTATTTATTATT > NC_000913/3837536‑3837687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |