| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,313,074 | (A)7→8 | intergenic (‑83/‑276) | alsR ← / → rpiB | DNA‑binding transcriptional repressor AlsR/allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,313,067 | 1 | . | A | 100.0% | 30.7 / NA | 10 | intergenic (‑76/‑283) | alsR/rpiB | DNA‑binding transcriptional repressor AlsR/allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (4/6); total (4/6) | |||||||||||
CTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑AAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATT > NC_000913/4312987‑4313136 | cTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTcac < 1:885063/81‑1 (MQ=255) atcaCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTcac‑a < 1:885064/79‑1 (MQ=255) atcaCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aa < 2:885065/80‑1 (MQ=255) aCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaaa < 2:885067/81‑1 (MQ=255) aCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaa < 2:885066/80‑1 (MQ=255) tctTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaaaaataa > 2:885149/1‑76 (MQ=255) gTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAAtt > 2:885093/1‑80 (MQ=255) cTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTtat < 2:885070/80‑1 (MQ=255) aattgaaGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAg < 1:885071/80‑1 (MQ=255) ccACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATtg < 2:885072/81‑1 (MQ=255) aCTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATtgtg < 1:885073/81‑1 (MQ=255) tataTCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGaa > 2:885090/1‑81 (MQ=255) tatCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACa < 1:885074/81‑1 (MQ=255) cAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTaa > 2:885091/1‑80 (MQ=255) gAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAAt < 1:885075/81‑1 (MQ=255) ggCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCAtt > 2:885096/1‑81 (MQ=255) | CTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑AAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATT > NC_000913/4312987‑4313136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |