| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 31 (0.940) | 23/160 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 23 (0.700) | 19/160 | 0.7 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGG > NC_000913/2737039‑2737196 | cacaAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTg > 2:492775/1‑80 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 2:691480‑M2/1‑1 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 2:214180‑M2/1‑1 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 2:214179‑M2/1‑1 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGa > 2:214206‑M2/80‑81 (MQ=255) acaAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTT‑ATTACACATTTTGACATCAGGAACGGTATGCTGAAt > 1:691336/1‑81 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGaa > 1:407836‑M2/79‑81 (MQ=255) aatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAAt < 2:691481‑M2/4‑1 (MQ=255) aaaaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAAtt > 1:492776/1‑80 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCAcc > 2:492805‑M2/71‑79 (MQ=255) gTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgc > 1:492777‑M2/1‑73 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACggg > 1:492808‑M2/63‑79 (MQ=255) aCAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgc < 1:4757‑M2/80‑12 (MQ=255) cAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgcca > 1:492778‑M2/1‑68 (MQ=255) caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACa < 1:691440‑M2/23‑1 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACaa < 2:67766‑M2/24‑1 (MQ=255) aaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaactt > 2:492779‑M2/1‑64 (MQ=255) aaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaact < 2:60068‑M2/80‑17 (MQ=255) aaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaact < 1:4780‑M2/80‑17 (MQ=255) aaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaact < 1:64864‑M2/80‑17 (MQ=255) gTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttac < 1:4771‑M2/81‑20 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAAtt > 2:492818‑M2/47‑81 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAAtt < 1:59989‑M2/35‑1 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAAtt > 1:492813‑M2/46‑80 (MQ=255) tATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtg < 1:60055‑M2/81‑30 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTa < 1:352596‑M2/37‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATg < 2:67754‑M2/39‑1 (MQ=255) agaTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtat < 2:352682‑M2/80‑33 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGAc > 2:492823‑M2/40‑80 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAAt > 2:492817‑M2/38‑81 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAAt > 2:492811‑M2/38‑81 (MQ=255) acataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGa < 1:64757‑M2/46‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGa < 2:4664‑M2/46‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGaa < 2:691426‑M2/47‑1 (MQ=255) cacaTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 1:60044‑M2/80‑45 (MQ=255) acaTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 2:352677‑M2/79‑45 (MQ=255) caTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag > 2:492780‑M2/1‑34 (MQ=255) tttGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg < 1:4761‑M2/81‑51 (MQ=255) ttGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg > 1:492781‑M2/1‑30 (MQ=255) tcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGc < 2:4622‑M2/57‑1 (MQ=255) tcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGc < 1:352614‑M2/57‑1 (MQ=255) gACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc < 1:67858‑M2/81‑54 (MQ=255) aataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaac < 2:214138‑M2/61‑1 (MQ=255) aataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaa > 1:492824‑M2/21‑80 (MQ=255) aataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaa > 2:492826‑M2/21‑80 (MQ=255) ttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATgg < 2:352587‑M2/67‑1 (MQ=255) aGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg > 1:492782‑M2/1‑22 (MQ=255) ggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGa > 1:492803‑M2/13‑80 (MQ=255) agtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAAt < 1:64768‑M2/71‑1 (MQ=255) gtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAAt > 1:492825‑M2/10‑80 (MQ=255) tATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt > 2:492729‑M2/1‑14 (MQ=255) attaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACt > 1:492821‑M2/7‑81 (MQ=255) cTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 1:67853‑M2/81‑72 (MQ=255) | CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGG > NC_000913/2737039‑2737196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |