| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,773,776 | 0 | C | T | 40.0% | 4.6 / 11.0 | 15 | H153H (CAC→CAT) | yfjW | CP4‑57 prophage; uncharacterized protein YfjW |
| Reads supporting (aligned to +/- strand): ref base C (7/2); new base T (3/3); total (10/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTGTTAAATATACTATATAATCTTTTTGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCATTAGTTTCCGCAATAATAATAGCCAT > NC_000913/2773696‑2773850 | ttGTTAAATATACTATATAATCTTTTTGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCAc > 2:499571/1‑81 (MQ=255) gTTAAATATACTATATAATCTTTTTGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCAcc < 1:499562/80‑1 (MQ=255) cTATATAATCTTTTTGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGAt > 2:499572/1‑80 (MQ=255) ttttGGGGCGATTTTATTGTCACTGTTTATTTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTc > 1:499579/1‑80 (MQ=255) ttttGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCTCTCCTTTTCCATCTTAATAAGATAAAACATATTc > 2:499577/1‑80 (MQ=255) tttGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATAtt < 1:499563/78‑1 (MQ=255) ttGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTCCaa > 2:499580/1‑81 (MQ=255) aTTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTCCAATGATTTTa > 2:499574/1‑81 (MQ=255) ttttATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCATCTTAATAAGATAAAACATATTCCAATGATTTTAt < 1:499564/81‑1 (MQ=255) cACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCATCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGa > 2:499573/1‑81 (MQ=255) ttATGTGTTTATCAAATTCCCTCCTTTTCCATCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCAt > 1:499581/1‑81 (MQ=255) tATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCAt > 1:499582/1‑80 (MQ=255) tATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCAt > 2:499576/1‑80 (MQ=255) tCAAATTCCCTCCTTTTCCATCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCATTAGTTTCCGc < 1:499565/80‑1 (MQ=255) ttCCCTCCTTTTCCATCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCATTAGTTTCCGCaataat < 2:499566/81‑1 (MQ=255) tttCCACCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCATTAGTTTCCGCAATAATAATAGCCa > 1:499575/1‑80 (MQ=255) ttCCACCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCATTAGTTTCCGCAATAATAATAGCCAt < 2:499567/80‑1 (MQ=255) | TTGTTAAATATACTATATAATCTTTTTGGGGCGATTTTATTGTCACTGTTTATGTGTTTATCAAATTCCCTCCTTTTCCACCTTAATAAGATAAAACATATTCCAATGATTTTATCGGCAATGATTCCATTAGTTTCCGCAATAATAATAGCCAT > NC_000913/2773696‑2773850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |