| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,447,651 | 0 | G | A | 47.8% | ‑4.6 / 29.6 | 23 | I39I (ATC→ATT) | rplX | 50S ribosomal subunit protein L24 |
| Reads supporting (aligned to +/- strand): ref base G (5/7); new base A (5/6); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATAGCGGCTTCTTTTTCAACGATGCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCTTTACCGGTTAAC > NC_000913/3447573‑3447729 | aaTAGCGGCTTCTTTTTCAACGATGCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTGa > 2:655884/1‑80 (MQ=255) gCTTCTTTTTCAACGATGCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTAATACCTTca < 1:655847/81‑1 (MQ=255) ttcttTTTCAACGATGCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTGATACCTTcaa > 2:655896/1‑80 (MQ=255) aCGATGCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTg < 1:655848/81‑1 (MQ=255) gCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTGCCgg > 1:655880/1‑80 (MQ=255) caaCCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTGCCGGa < 2:655849/78‑1 (MQ=255) gttCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACAtt > 2:655889/1‑81 (MQ=255) aGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTa < 2:655850/81‑1 (MQ=255) gAACCGGCTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTAc < 1:655851/81‑1 (MQ=255) ggCTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGt < 1:655852/81‑1 (MQ=255) gCTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGtt > 1:655906/1‑81 (MQ=255) gCTTCTGATGTTTCTTAACCAGGTTGATACCATCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGtt < 2:655853/81‑1 (MQ=255) cTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGttt < 2:655854/81‑1 (MQ=255) cTTCTGATGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGtt > 1:655894/1‑80 (MQ=255) aTGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCttt < 2:655855/81‑1 (MQ=255) aTGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCttt < 1:655856/81‑1 (MQ=255) tGTTTCTTAACCAGGTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTa > 1:655887/1‑81 (MQ=255) cTTAACCAGGTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCtt > 2:655893/1‑80 (MQ=255) tAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCTTTAc > 2:655913/1‑81 (MQ=255) aaCCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCttt < 2:655858/78‑1 (MQ=255) aaCCAGGTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCttt < 2:655857/78‑1 (MQ=255) ggTTAATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCTTTACCGGtt > 1:655877/1‑80 (MQ=255) ttGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCTTTACCGGTTAac < 1:655859/81‑1 (MQ=255) | AATAGCGGCTTCTTTTTCAACGATGCCACCCGGTTGGTTCAGGGCCGGAACCGGCTTCTGATGTTTCTTAACCAGGTTGATACCTTCAACAATGACCTTGCCGGAAGACAGGACATTCTTAACTTTACCGCGTTTACCTTTATCTTTACCGGTTAAC > NC_000913/3447573‑3447729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |