| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 601,907 | C→T | intergenic (+50/‑52) | cusA → / → pheP | copper/silver export system RND permease/phenylalanine:H(+) symporter PheP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 601,907 | 0 | C | T | 97.2% | 120.0 / ‑4.0 | 36 | intergenic (+50/‑52) | cusA/pheP | copper/silver export system RND permease/phenylalanine:H(+) symporter PheP |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (23/12); total (23/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
GCTGCACCGACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGCACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAACCGTATCG > NC_000913/601830‑601982 | gCTGCACCGACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTAc < 1:131136/80‑1 (MQ=255)gCTGCACCGACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTAc < 2:131135/80‑1 (MQ=255) cACCGACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTaa < 2:131137/79‑1 (MQ=255) cGACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGtt < 1:131138/81‑1 (MQ=255) gACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGtt > 2:131185/1‑80 (MQ=255) cgtCGGGTACGAAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTaaa < 1:131139/79‑1 (MQ=255) aTCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTaa > 1:131179/1‑79 (MQ=255) aCGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATTGTTACTAAATGTTAAAATTTGccc > 1:967922/1‑81 (MQ=255) aCGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGccc > 2:131170/1‑81 (MQ=255) aCGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGccc > 1:131171/1‑81 (MQ=255) cGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGcccc > 2:131176/1‑81 (MQ=255) aaaTAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTc > 1:131180/1‑80 (MQ=255) aaTAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaa > 2:131161/1‑81 (MQ=255) tAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaaca < 2:131140/81‑1 (MQ=255) aaaaGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaaca > 2:131183/1‑80 (MQ=255) aaaaGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaaca > 1:131181/1‑80 (MQ=255) aaaGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaacaa > 2:131177/1‑80 (MQ=255) aaaGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaacaa > 2:131187/1‑80 (MQ=255) aaaGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTcaacaa > 2:131194/1‑80 (MQ=255) aGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACaaaa > 2:131173/1‑80 (MQ=255) cAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAg < 1:131141/81‑1 (MQ=255) aGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGa < 1:131142/81‑1 (MQ=255) gTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAggg > 2:131186/1‑80 (MQ=255) tAACCGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGa > 1:131195/1‑79 (MQ=255) ccGTGTGGATTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGc < 2:131143/81‑1 (MQ=255) aTTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGaaaaa > 2:131197/1‑81 (MQ=255) aTTGTGTCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGaaaaa < 1:131144/81‑1 (MQ=255) tgtCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAAcgcg < 2:131145/81‑1 (MQ=255) tCTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTc < 2:131146/81‑1 (MQ=255) cTTGCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTc > 2:131184/1‑80 (MQ=255) gCGACGATGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAAcc > 1:131201/1‑81 (MQ=255) gCGACGATGGGCACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCa < 1:131147/78‑1 (MQ=255) cgacgaTGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAACCg > 1:131191/1‑81 (MQ=255) gaTGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAACCGTATc > 1:131196/1‑81 (MQ=255) aTGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAACCGTATCg > 1:131192/1‑81 (MQ=255) tGGGTACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAACCGTATCg > 1:131189/1‑80 (MQ=255) | GCTGCACCGACATCGGGTACGGAAATAAAAGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGCACTAAATGTTAAAAGGTGCCCCTCAACAAAAAAGACACACAGGGGAAAGGCGTGAAAAACGCGTCAACCGTATCG > NC_000913/601830‑601982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |