| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 970,141 | C→T | I251I (ATC→ATT) | ycaQ → | winged helix DNA‑binding domain‑containing protein YcaQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 970,141 | 0 | C | T | 96.2% | 84.5 / ‑3.6 | 26 | I251I (ATC→ATT) | ycaQ | winged helix DNA‑binding domain‑containing protein YcaQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (14/11); minor base G (1/0); total (15/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
GTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGC > NC_000913/970063‑970214 | gTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTAt < 2:199951/81‑1 (MQ=255) tggctggcAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAattatt < 1:199952/81‑1 (MQ=255) gctggcAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTg < 2:199953/80‑1 (MQ=255) cAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCtgtg > 1:199985/1‑80 (MQ=255) aGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCa > 1:200004/1‑81 (MQ=255) gATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCAt > 1:199989/1‑81 (MQ=255) aTTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATg > 1:199995/1‑81 (MQ=255) aCTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGtt > 2:199991/1‑80 (MQ=255) aCTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGtt < 2:199954/80‑1 (MQ=255) cTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTg < 2:606685/80‑1 (MQ=255) cTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTg < 2:199955/80‑1 (MQ=255) aTCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGaa > 2:200003/1‑80 (MQ=255) ggCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGaaaaa < 1:199956/80‑1 (MQ=255) ggCTGAAACGTCCGGCACTAGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAAt < 2:199957/81‑1 (MQ=255) cGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAAt < 1:199958/81‑1 (MQ=255) tCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCt < 1:199959/81‑1 (MQ=255) ggCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTg > 2:200001/1‑81 (MQ=255) ggcggcGTGGCGCGAAGCGAGGGTTGAACAGCAGCAAATTATTGTTGTGCATGTTGAAAAATTGGGCAATCTTTTGCTGCa > 2:200000/1‑81 (MQ=255) cggcgTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCatg < 1:199960/81‑1 (MQ=255) gcgAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTtgc > 1:199998/1‑81 (MQ=255) gAAGCGAGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTtgctg > 1:200012/1‑81 (MQ=255) aGGGCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTa > 2:200009/1‑81 (MQ=255) ggCTGAACAGCAGCAAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACt > 1:200008/1‑81 (MQ=255) aCAGCAGAAAATGAGGGCGGGGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTcgagc > 1:199997/1‑80 (MQ=255) gcagcaAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCgagcgagc > 2:199984/1‑81 (MQ=255) cagcaAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGagcgagcg > 2:200013/1‑81 (MQ=255) agcaAATTATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGTGAgcgc < 2:199961/81‑1 (MQ=255) | GTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGC > NC_000913/970063‑970214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |