| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,108,581 | G→A | P121S (CCT→TCT) | opgC ← | protein required for succinyl modification of osmoregulated periplasmic glucans |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,108,581 | 0 | G | A | 100.0% | 62.1 / NA | 18 | P121S (CCT→TCT) | opgC | protein required for succinyl modification of osmoregulated periplasmic glucans |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/3); total (15/3) | |||||||||||
AACACCAGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGGCCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATGGCTGTTAACA > NC_000913/1108505‑1108658 | aaCACCAGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCaa > 2:223140/1‑81 (MQ=255) aGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTcc > 1:223141/1‑81 (MQ=255) aGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTcc > 1:223146/1‑81 (MQ=255) aGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTcc > 1:223147/1‑81 (MQ=255) aGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTcc < 2:223129/81‑1 (MQ=255) tAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTCCGc > 1:223162/1‑81 (MQ=255) aaaaCCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTCCGCtt < 2:223130/81‑1 (MQ=255) aaaCCACAGGTGTGATATTAATTTCCAGGTCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTCCGCctt > 2:223142/1‑81 (MQ=255) ttAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTg > 1:223149/1‑79 (MQ=255) ccAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCataa > 2:223153/1‑80 (MQ=255) ccAACGTATTATATTTGTCATACAATGACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAAtt > 2:223150/1‑81 (MQ=255) tattatATTTGTCATACAATGACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTa < 2:223131/81‑1 (MQ=255) aCAATGACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGa > 1:223157/1‑81 (MQ=255) aaTGACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATg > 1:223152/1‑81 (MQ=255) gACAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATGGCt > 1:223151/1‑81 (MQ=255) aCAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATGGCTg > 2:223155/1‑81 (MQ=255) cAGCCCAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATGGCTGt > 2:223156/1‑81 (MQ=255) cAGACCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATGGCTGTTAACa > 1:223145/1‑81 (MQ=255) | AACACCAGTAAAAACCACAGGTGTGATATTAATTCCCAGGCCAACGTATTATATTTGTCATACAATGACAGCCCAGGCCAACTTTCCGCTTTTCCTTTGACATATTGCAGCATAATAAATTGCGGTAATGTCAGTAGGGGGATGGCTGTTAACA > NC_000913/1108505‑1108658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |