| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,123,388 | C→T | intergenic (‑115/+19) | yceB ← / ← grxB | putative lipid‑binding lipoprotein YceB/reduced glutaredoxin 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,123,388 | 0 | C | T | 96.2% | 85.0 / ‑4.1 | 26 | intergenic (‑115/+19) | yceB/grxB | putative lipid‑binding lipoprotein YceB/reduced glutaredoxin 2 |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (12/13); total (13/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CAACGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCATATTATCGCG > NC_000913/1123313‑1123463 | caACGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCcg < 2:225405/81‑1 (MQ=255) gcagcaTGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCgcggc < 1:225406/81‑1 (MQ=255) gtgtCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAg > 2:225427/1‑81 (MQ=255) tgtCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAgg < 1:225407/81‑1 (MQ=255) tCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGa < 2:225408/80‑1 (MQ=255) aCCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGAtt < 2:225409/80‑1 (MQ=255) cAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTaaa > 2:225435/1‑81 (MQ=255) gCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATc < 2:225410/81‑1 (MQ=255) aTAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGc > 2:225439/1‑80 (MQ=255) cGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATtgat > 1:225411/1‑80 (MQ=255) ccAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTgatgat < 2:225412/81‑1 (MQ=255) gcagAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAAc < 1:225413/81‑1 (MQ=255) cagAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAAc > 2:225434/1‑80 (MQ=255) agAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACa > 1:225445/1‑80 (MQ=255) aaCGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTc > 1:225440/1‑81 (MQ=255) aCGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCt < 1:225414/81‑1 (MQ=255) aCGGCGGCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCt > 1:225437/1‑81 (MQ=255) cggcggCAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTg > 2:225438/1‑81 (MQ=255) ggcggcAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGt > 2:225443/1‑81 (MQ=255) gcggcAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGtt < 2:225415/81‑1 (MQ=255) ggcAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTc < 2:225416/81‑1 (MQ=255) gcAACCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCg < 2:225417/81‑1 (MQ=255) aaCCCGCGAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGc > 1:225448/1‑80 (MQ=255) gcgAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCatat > 1:225441/1‑80 (MQ=255) cgAATACAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCAtatta < 1:225418/81‑1 (MQ=255) aCAGGTTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCATATTATcgcg > 2:225452/1‑81 (MQ=255) | CAACGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGCGGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCATATTATCGCG > NC_000913/1123313‑1123463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |