| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,219,687 | T→C | pseudogene (87/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,219,687 | 0 | T | C | 100.0% | 50.5 / NA | 16 | pseudogene (87/2648 nt) | ycgH | putative transporter component, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/5); total (11/5) | |||||||||||
CTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAA > NC_000913/1219616‑1219758 | cTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGtat > 2:240890/1‑80 (MQ=255) tCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATaa > 1:240876/1‑81 (MQ=255) cccGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATaa < 2:240862/79‑1 (MQ=255) gTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCta < 2:240863/81‑1 (MQ=255) tttAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCtat < 1:240864/81‑1 (MQ=255) ttAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCtata > 2:240881/1‑81 (MQ=255) aGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTatat > 1:240877/1‑80 (MQ=255) ggACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACtgat < 2:240865/81‑1 (MQ=255) gTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGa > 2:240871/1‑80 (MQ=255) ggTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAAt > 2:240883/1‑80 (MQ=255) atGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGataat > 1:240878/1‑80 (MQ=255) aaCACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATcc > 1:240880/1‑81 (MQ=255) acaATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGa > 2:240882/1‑80 (MQ=255) acaATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGa > 2:240885/1‑80 (MQ=255) aaTTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATaa < 1:240866/81‑1 (MQ=255) gttgGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTaa > 2:240879/1‑81 (MQ=255) | CTCCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAA > NC_000913/1219616‑1219758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |