| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,405,809 | A→G | intergenic (‑58/‑170) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,405,809 | 0 | A | G | 100.0% | 43.9 / NA | 14 | intergenic (‑58/‑170) | mcaS/smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (7/7); total (7/7) | |||||||||||
TTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCACGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCTTAAAATATCGGCAA > NC_000913/1405733‑1405883 | ttGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGaa < 2:269190/81‑1 (MQ=255) cctcTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAatat > 2:269211/1‑80 (MQ=255) ctctGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAAtata < 2:269191/80‑1 (MQ=255) ccGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAATATAAGTTACat < 2:269192/81‑1 (MQ=255) gTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAATATAAGTTACattat < 1:269193/81‑1 (MQ=255) gtTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCg > 1:269212/1‑81 (MQ=255) tAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGaataat > 2:269214/1‑80 (MQ=255) ccTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATg < 2:269194/81‑1 (MQ=255) aTTTTCTTCAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTg > 1:269210/1‑81 (MQ=255) tcttcAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCtt < 2:269195/80‑1 (MQ=255) cttcAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCTTa > 2:269220/1‑80 (MQ=255) tcAGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCTTaaaa > 1:269215/1‑81 (MQ=255) aGTGACAGATTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCTTAAAat < 2:269196/80‑1 (MQ=255) aTTTCGCGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCTTAAAATATCGGCaa > 2:269233/1‑80 (MQ=255) | TTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTGACAGATTTCACGAAAATATAAGTTACATTATTAATATCGTGAATGAATAATCATGCATAAGTATTTTGCTTAAAATATCGGCAA > NC_000913/1405733‑1405883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |